# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.59e-49 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 3.41e-48 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 4.30e-47 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 3.08e-46 1kb9A 431 6.78e-46 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.92e-45 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 1.38e-42 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 1.94e-42 2fgeA 995 1.14e-37 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3cx5B 352 4.97e-34 1kb9B 352 5.90e-34 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 7.52e-34 d.185.1.1,d.185.1.1 59543,59544 1l5aA 436 0.4275 c.43.1.2,c.43.1.2 75923,75924 1mi3A 322 1.544 c.1.7.1 91274 1wyuB 474 1.545 c.67.1.7 121453 1i1iP 681 1.780 d.92.1.5 40297 1d2fA 390 2.903 c.67.1.3 34411 1wovA 250 2.962 a.132.1.1 121124 2q83A 346 4.122 3buvA 326 4.442 2hejA 323 4.799 1b8gA 429 5.770 c.67.1.4 34499 2hdyA 440 5.937 2agtA 319 6.501 1ynuA 473 6.891 c.67.1.4 123762 1ki1B 352 7.024 a.87.1.1,b.55.1.1 72497,72498 1yakA 263 8.445 a.132.1.3 122833 1xi9A 406 9.391 c.67.1.1 115355 2z20A 432 9.508 1gdeA 389 9.635 c.67.1.1 60456 1c7nA 399 9.693 c.67.1.3 34413 1tqxA 227 9.717 c.1.2.2 112614 2p4fA 299 9.748 1frb 315 9.771 1zuaX 317 9.836 2o36A 674 9.98 1bw0A 416 10.05 c.67.1.1 34385 1u08A 386 10.21 c.67.1.1 107543 1n45A 233 10.51 a.132.1.1 79981 1wzdA 215 11.15 a.132.1.1 121493 1hw6A 278 11.48 c.1.7.1 61296 2douA 376 12.00 3broA 141 12.45 1s1pA 331 12.56 c.1.7.1 98350 1ad4A 266 12.64 c.1.21.1 29670 2bbrA 195 13.00 1js3A 486 13.39 c.67.1.6 67215 2qcxA 263 13.68 1w7lA 422 14.12 c.67.1.1 109226 2ao0A 324 14.62 1s4bP 674 14.70 d.92.1.5 105252 1m7yA 435 14.78 c.67.1.4 78761 3boqA 160 15.14 3c5iA 369 15.45 2fa5A 162 15.76 1vbjA 281 16.64 1ads 315 16.84 1us0A 316 16.86 c.1.7.1 99850 1zgdA 312 16.97 1rtwA 220 17.80 a.132.1.3 97823 1iw0A 215 18.54 a.132.1.1 83720 2tysA 268 19.62 c.1.2.4 28572 1m6sA 347 19.62 c.67.1.1 78701 1jf3A 147 20.14 a.1.1.2 71642 1t3iA 420 20.36 c.67.1.3 106354 1xjzA 233 20.44 a.132.1.1 122049 2dtjA 178 21.33 1zybA 232 22.02 a.4.5.4,b.82.3.2 125815,125816 2hufA 393 22.20 1vp4A 425 22.45 c.67.1.1 113935 1bjnA 360 24.08 c.67.1.4 34469 1eg5A 384 24.26 c.67.1.3 34429 2qgnA 322 24.83 1m5wA 243 25.82 c.1.24.1 84836 1xbyA 216 26.42 c.1.2.3 121846 2agaA 190 28.42 1fe0A 68 29.09 d.58.17.1 39345 3bjhA 119 29.42 1oohA 126 29.64 a.39.2.1 93383 1tyhA 248 29.69 a.132.1.3 107458 2rdpA 150 31.04 2yviA 111 31.04 3bpvA 138 31.92 1u4qA 322 32.66 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1qwkA 317 32.83 c.1.7.1 96482 1v33A 366 32.93 d.264.1.1 100278 1pufB 73 33.27 a.4.1.1 95132 2dtvA 397 33.68 2b5hA 200 34.52 b.82.1.19 127894 2hoxA 427 34.97 c.67.1.1 136644 1rec 201 36.95 2f2gA 221 37.14 a.132.1.3 132816 3d1uA 288 37.40 1bjwA 382 37.93 c.67.1.1 34349 1xvhA 129 38.52 a.8.1.2,a.8.1.2 116084,116085 1lc5A 364 38.85 c.67.1.1 73827 1vqqA 646 38.86 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1txdA 385 38.88 a.87.1.1,b.55.1.1 107422,107423 3bj6A 152 39.08 1v2dA 381 39.09 c.67.1.1 108281 2ag5A 246 39.41 c.2.1.2 126719 3cjnA 162 39.58 1nfp 228 39.99 3bczA 293 40.61 1jg8A 347 40.88 c.67.1.1 62946 1fsiA 189 41.42 d.61.1.1 39536 1ojqA 212 41.44 d.166.1.1 93146 1r45A 204 42.41 d.166.1.1 111683 2pftA 571 42.66 1ynpA 317 43.01 1nfpA 228 44.91 c.1.16.2 29555 3bhcA 249 45.10 2nn4A 72 45.56 3bjaA 139 45.57 1qkkA 155 45.86 c.23.1.1 31104 2p90A 319 46.16 1ho1A 242 46.30 c.1.24.1 61097 1wstA 417 46.52 c.67.1.1 121244 1rtqA 299 47.58 c.56.5.4 97819 2q4eA 362 47.93 2hehA 387 48.27 1i6xA 209 48.46 a.4.5.4,b.82.3.2 83673,83674 1j32A 388 48.82 c.67.1.1 77067 1qgoA 264 49.35 c.92.1.2 35596 2qg7A 458 50.75 1ny1A 240 51.41 c.6.2.3 86395 2csgA 424 51.83 b.82.2.12 130768 2d1eA 248 52.43 2ccqA 99 52.62 d.314.1.1 130252 3btxA 204 53.64 3crrA 323 53.81 3ck6A 252 54.79 1h1yA 228 55.65 c.1.2.2 76506 1b5pA 385 56.94 c.67.1.1 90403 1yyaA 250 57.32 1lokA 291 57.44 c.56.5.4 78122 2c8mA 262 57.56 2aplA 157 59.05 a.258.1.1 127132 2nogA 173 59.16 1omiA 248 59.26 b.82.3.3,a.4.5.4 87079,87080 2db9A 149 59.32 1yizA 429 60.25 c.67.1.1 123375 2zfoA 140 61.57 1iugA 352 61.83 c.67.1.3 90699 1ad1A 266 63.09 c.1.21.1 29668 3cedA 98 63.18 2q4xA 221 64.54 a.132.1.3 139880 3cjpA 272 65.07 1spgA 144 65.21 a.1.1.2 15409 1yozA 116 65.52 a.253.1.1 123796 1j96A 323 65.53 c.1.7.1 71616 1fvpA 231 65.83 c.1.16.2 29556 1mxsA 225 66.14 c.1.10.1 91494 2z8aA 146 67.48 1nw1A 429 68.69 d.144.1.8 86286 1j6wA 175 70.96 d.185.1.2 62663 1j7lA 264 71.67 d.144.1.6 62697 1m32A 366 72.88 c.67.1.3 78508 1lqaA 346 73.80 c.1.7.1 84674 1a04A 215 74.88 a.4.6.2,c.23.1.1 16234,31089 3bhpA 60 75.21 3bwnA 391 76.23 2ho3A 325 76.36 1sk7A 198 76.70 a.132.1.2 105671 1jf9A 408 76.75 c.67.1.3 62931 2qrrA 101 78.05 1fadA 99 81.51 a.77.1.2 18428 2ou3A 161 81.58 2dt9A 167 81.76 2glxA 332 82.23 2g3bA 208 83.10 a.4.1.9,a.121.1.1 134558,134559 1b72B 87 84.53 a.4.1.1 16001 2gxgA 146 85.03 2q4wA 524 85.39 2vooA 193 85.57 1vjeA 166 85.88 d.185.1.2 100807 2q0yA 153 86.97 1na3A 91 87.38 k.38.1.1 85481 2c71A 216 87.58 c.6.2.3 130017 2d2mA 140 87.70 1jv1A 505 88.36 c.68.1.5 71892 1ky3A 182 89.23 c.37.1.8 73193 1ofgA 381 89.35 c.2.1.3,d.81.1.5 30064,39979 1cc8A 73 89.77 d.58.17.1 39343