# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.64e-54 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 4.37e-53 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 7.16e-52 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 2.55e-51 1kb9A 431 2.28e-50 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 9.83e-50 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 1.10e-49 1q2lA 939 2.00e-48 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 4.36e-45 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.18e-38 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 4.44e-38 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 5.71e-37 1wyuB 474 0.6670 c.67.1.7 121453 1i1iP 681 1.311 d.92.1.5 40297 3buvA 326 2.105 3broA 141 2.282 1c7nA 399 2.348 c.67.1.3 34413 2dgmA 466 3.948 c.67.1.6 131508 3bpvA 138 4.349 1ynuA 473 4.838 c.67.1.4 123762 1xi9A 406 4.888 c.67.1.1 115355 2p4fA 299 4.913 1d2fA 390 5.358 c.67.1.3 34411 1m6sA 347 5.934 c.67.1.1 78701 2qfjA 216 6.222 3bjaA 139 6.257 2hoxA 427 6.393 c.67.1.1 136644 3bj6A 152 6.880 1wovA 250 7.046 a.132.1.1 121124 1w7lA 422 7.256 c.67.1.1 109226 2hdyA 440 7.411 2douA 376 8.045 1kl1A 419 8.512 c.67.1.4 72663 1jg8A 347 8.851 c.67.1.1 62946 1bw0A 416 9.214 c.67.1.1 34385 1gdeA 389 10.04 c.67.1.1 60456 2c8mA 262 10.15 2gxgA 146 10.70 2z20A 432 11.27 2rdpA 150 12.06 1m7yA 435 13.26 c.67.1.4 78761 2i7qA 402 13.49 2qr4A 587 13.78 1vp4A 425 13.79 c.67.1.1 113935 1j7lA 264 13.98 d.144.1.6 62697 2f2gA 221 14.29 a.132.1.3 132816 1l5aA 436 16.32 c.43.1.2,c.43.1.2 75923,75924 2fa5A 162 16.81 3csvA 333 17.01 2fbhA 146 17.16 a.4.5.28 133245 1yizA 429 17.22 c.67.1.1 123375 3boqA 160 18.01 1aisB 200 18.02 a.74.1.2,a.74.1.2 18384,18385 3c5iA 369 18.28 1bjnA 360 18.48 c.67.1.4 34469 2hufA 393 18.52 2q83A 346 18.72 1jf9A 408 19.08 c.67.1.3 62931 1jyoA 130 19.59 d.198.1.1 67483 1dfoA 417 19.86 c.67.1.4 34480 1t3iA 420 20.58 c.67.1.3 106354 1zzkA 82 20.58 d.51.1.1 125909 1in4A 334 20.62 a.4.5.11,c.37.1.20 62597,62598 1zybA 232 21.02 a.4.5.4,b.82.3.2 125815,125816 2hr3A 147 21.04 a.4.5.28 136678 2id3A 225 21.09 a.4.1.9,a.121.1.1 137261,137262 2c0rA 362 22.10 c.67.1.4 129604 1wstA 417 22.30 c.67.1.1 121244 1fsiA 189 22.97 d.61.1.1 39536 2nyxA 168 23.25 3bhpA 60 23.28 1lk9A 448 23.84 c.67.1.1 78057 2cxaA 256 24.36 d.108.1.6 130993 1rec 201 25.79 1u08A 386 25.82 c.67.1.1 107543 1b8gA 429 25.99 c.67.1.4 34499 3bwnA 391 26.94 1w23A 360 27.79 c.67.1.4 114088 2cdnA 201 28.39 c.37.1.1 130289 2bbrA 195 28.72 2q4xA 221 29.48 a.132.1.3 139880 1lj9A 144 30.14 a.4.5.28 78035 1yadA 221 30.24 3bddA 142 30.40 2tysA 268 31.99 c.1.2.4 28572 1vjeA 166 32.20 d.185.1.2 100807 2nnnA 140 32.99 2di4A 238 33.58 a.269.1.1 131522 1e8aA 91 33.72 a.39.1.2 17188 2o36A 674 33.86 2dtvA 397 35.06 1ki1B 352 35.97 a.87.1.1,b.55.1.1 72497,72498 1lnwA 147 35.98 a.4.5.28 78104 1htqA 477 36.54 d.15.9.1,d.128.1.1 71035,71036 1bl3A 160 36.79 c.55.3.2 33655 1fxlA 167 36.86 d.58.7.1,d.58.7.1 39183,39184 2d1eA 248 37.11 2ethA 154 37.85 a.4.5.28 132358 1nfpA 228 38.19 c.1.16.2 29555 1iugA 352 38.33 c.67.1.3 90699 2qcxA 263 38.56 1bj4A 470 38.70 c.67.1.4 34479 1pmmA 466 39.80 c.67.1.6 94901 2cohA 202 41.02 a.4.5.4,b.82.3.2 130677,130678 2fyfA 398 41.83 1ofgA 381 42.34 c.2.1.3,d.81.1.5 30064,39979 2dr1A 386 43.16 1omrA 201 43.25 a.39.1.5 93349 2bv6A 142 43.61 1rv3A 483 43.88 c.67.1.4 105101 3bs9A 87 43.91 1nvpB 57 44.47 a.32.1.1 92211 1m32A 366 44.96 c.67.1.3 78508 1j7gA 144 45.41 c.110.1.1 84130 2q91A 101 45.53 1a4pA 96 45.93 a.39.1.2 17176 2f6lA 166 46.15 a.130.1.4 133049 2bvcA 486 46.71 d.15.9.1,d.128.1.1 129243,129244 2r2nA 425 48.30 1xd7A 145 48.98 a.4.5.55 109566 1d8dA 377 49.12 a.118.6.1 19185 1kqpA 271 49.14 c.26.2.1 72883 1z67A 135 49.39 a.259.1.1 124507 1f44A 324 49.77 a.60.9.1,d.163.1.1 64982,64983 1i6xA 209 49.78 a.4.5.4,b.82.3.2 83673,83674 1ufaA 520 49.85 a.8.3.3,c.6.2.4 99329,99330 2aaoA 166 50.11 2uv0E 175 50.24 2fd5A 180 50.44 a.4.1.9,a.121.1.1 133291,133292 2ig7A 401 51.61 3btxA 204 52.01 3bk2A 562 52.17 1j32A 388 54.39 c.67.1.1 77067 1qlsA 99 54.89 a.39.1.2 17185 2gpuA 230 55.08 a.123.1.1 135493 2gb3A 409 55.37 c.67.1.1 134903 2e2rA 244 57.16 1lucB 324 57.28 c.1.16.1 29548 1xjzA 233 57.38 a.132.1.1 122049 1j98A 157 57.42 d.185.1.2 62755 1rtqA 299 58.02 c.56.5.4 97819 1v2dA 381 58.20 c.67.1.1 108281 1f5qB 252 58.28 a.74.1.1,a.74.1.1 18362,18363 2rgiA 98 58.51 2b5hA 200 58.53 b.82.1.19 127894 3cedA 98 59.30 1sk7A 198 59.83 a.132.1.2 105671 1s9pA 227 60.02 a.123.1.1 105384 2fp1A 166 60.82 a.130.1.4 133891 1frb 315 61.87 2ze7A 253 63.65 1ci9A 392 63.68 e.3.1.1 64767 2dtjA 178 63.70 3cnhA 200 63.99 2j6gA 266 64.40 2qcoA 210 64.79 2gnxA 365 64.93 1tyhA 248 65.27 a.132.1.3 107458 1eg5A 384 65.50 c.67.1.3 34429 1zejA 293 65.69 1k3eA 156 66.70 d.198.1.1 68103 3cg6A 146 66.73 1ub0A 258 67.23 c.72.1.2 88394 1ywfA 296 67.49 c.45.1.5 124144 2pftA 571 68.22 2fq4A 192 68.44 a.4.1.9,a.121.1.1 133937,133938 2yviA 111 69.11 2zg5A 397 70.97 2agtA 319 71.27 2anrA 178 72.21 1j6wA 175 73.66 d.185.1.2 62663 2fnuA 375 73.81 c.67.1.4 133831 1js3A 486 74.18 c.67.1.6 67215 2dobA 83 74.19 2fbiA 142 74.61 a.4.5.28 133246 1lc5A 364 76.15 c.67.1.1 73827 2vooA 193 76.35 2qguA 211 76.43 1ihgA 370 76.79 a.118.8.1,b.62.1.1 62380,62381 1o69A 394 76.91 c.67.1.4 92560 2e5aA 347 78.22 1tqxA 227 78.46 c.1.2.2 112614 2p90A 319 80.08 1fe0A 68 82.14 d.58.17.1 39345 1g8iA 190 82.50 a.39.1.5 60363 1s3jA 155 82.73 a.4.5.28 98437 1jayA 212 83.90 c.2.1.6 66478 3bc8A 450 84.26 2h2kA 106 84.36 1tltA 319 84.58 c.2.1.3,d.81.1.5 107135,107136 2qswA 100 85.50 3cjnA 162 86.26 3bosA 242 87.92 3colA 196 88.20 1na3A 91 89.29 k.38.1.1 85481