# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 7.51e-55 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.56e-53 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 2.77e-52 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 3.47e-51 2g47A 990 8.91e-51 1kb9A 431 8.88e-50 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 3.52e-49 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 2.29e-48 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 6.16e-45 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 7.53e-38 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 2.85e-37 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 5.99e-37 1l5aA 436 1.044 c.43.1.2,c.43.1.2 75923,75924 1zejA 293 1.142 1wyuB 474 2.875 c.67.1.7 121453 2hoxA 427 3.703 c.67.1.1 136644 1wybA 392 4.049 1lk9A 448 4.751 c.67.1.1 78057 1y791 680 4.812 1htqA 477 5.912 d.15.9.1,d.128.1.1 71035,71036 1s6yA 450 6.255 c.2.1.5,d.162.1.2 105314,105315 1ofgA 381 6.276 c.2.1.3,d.81.1.5 30064,39979 1vp4A 425 6.590 c.67.1.1 113935 2gruA 368 6.988 2i7qA 402 7.555 1zcjA 463 7.565 2cvzA 289 8.947 a.100.1.1,c.2.1.6 130890,130891 2qfjA 216 9.022 2id3A 225 9.071 a.4.1.9,a.121.1.1 137261,137262 1kqpA 271 9.077 c.26.2.1 72883 1i1iP 681 9.365 d.92.1.5 40297 1w7lA 422 9.611 c.67.1.1 109226 3csvA 333 10.11 2q83A 346 11.71 3buvA 326 11.84 2hejA 323 12.06 3c5iA 369 12.40 1wovA 250 13.50 a.132.1.1 121124 1m7yA 435 13.59 c.67.1.4 78761 3broA 141 14.16 2glxA 332 14.29 2agtA 319 14.33 2pftA 571 14.34 1xi9A 406 15.51 c.67.1.1 115355 3cnhA 200 15.90 1ufaA 520 16.28 a.8.3.3,c.6.2.4 99329,99330 1zybA 232 17.53 a.4.5.4,b.82.3.2 125815,125816 2dgmA 466 17.94 c.67.1.6 131508 1yizA 429 18.06 c.67.1.1 123375 1lqaA 346 18.70 c.1.7.1 84674 1fviA 297 18.71 b.40.4.6,d.142.2.1 25364,41578 1d2fA 390 19.18 c.67.1.3 34411 1us0A 316 19.26 c.1.7.1 99850 1w6kA 732 20.01 a.102.4.2,a.102.4.2 114271,114272 1ouvA 273 20.31 a.118.18.1 93570 1l9cA 389 20.39 c.3.1.2,d.16.1.3 77815,77816 1j7lA 264 20.48 d.144.1.6 62697 1rfmA 344 20.80 c.122.1.1 97385 1c7nA 399 22.25 c.67.1.3 34413 1m6sA 347 22.67 c.67.1.1 78701 2debA 653 23.50 2cxaA 256 23.66 d.108.1.6 130993 1pg5A 299 26.10 c.78.1.1,c.78.1.1 104146,104147 1eexA 554 26.18 c.1.19.3 29650 2c8mA 262 26.46 3bpvA 138 27.41 1bg6 359 29.40 1u4qA 322 29.50 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 3bosA 242 30.65 2p4fA 299 31.04 1d3vA 323 31.48 c.42.1.1 32559 1qwkA 317 32.26 c.1.7.1 96482 2cohA 202 32.60 a.4.5.4,b.82.3.2 130677,130678 1ki1B 352 32.82 a.87.1.1,b.55.1.1 72497,72498 1y56B 382 32.97 1ynuA 473 33.00 c.67.1.4 123762 1bw0A 416 33.07 c.67.1.1 34385 2o36A 674 33.84 3bjaA 139 34.77 1sgvA 316 35.10 b.122.1.1,d.265.1.2 98858,98859 1hynP 379 35.79 d.112.1.2 61408 8abp 306 35.88 1f0yA 302 36.16 a.100.1.3,c.2.1.6 18793,30197 3bj6A 152 37.47 2cdnA 201 39.36 c.37.1.1 130289 2ho3A 325 40.47 3bk2A 562 41.05 2douA 376 41.60 1gox 370 42.06 2bbrA 195 42.13 2gnxA 365 42.56 1yadA 221 43.14 1jg8A 347 43.28 c.67.1.1 62946 1yzbA 182 44.65 1auiA 521 45.99 d.159.1.3 42085 2b5hA 200 47.05 b.82.1.19 127894 1pmmA 466 47.57 c.67.1.6 94901 1frb 315 47.83 1fxlA 167 47.86 d.58.7.1,d.58.7.1 39183,39184 1jv1A 505 48.22 c.68.1.5 71892 2hdyA 440 48.63 1kl1A 419 49.18 c.67.1.4 72663 1tyhA 248 49.43 a.132.1.3 107458 1r2zA 274 49.49 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1eg5A 384 50.65 c.67.1.3 34429 1nxuA 333 50.95 c.122.1.1 86389 2gxgA 146 51.11 1j96A 323 51.31 c.1.7.1 71616 1f44A 324 51.48 a.60.9.1,d.163.1.1 64982,64983 1txdA 385 52.71 a.87.1.1,b.55.1.1 107422,107423 2gn4A 344 52.75 3d1uA 288 52.91 2tpt 440 52.92 2nx9A 464 53.67 1gdeA 389 54.11 c.67.1.1 60456 1yf2A 425 55.40 d.287.1.2,d.287.1.2 123042,123043 1cshA 435 55.43 a.103.1.1 18880 2g8yA 385 55.78 2f2gA 221 56.83 a.132.1.3 132816 1vbiA 344 57.31 2qneA 495 61.05 1jf9A 408 63.49 c.67.1.3 62931 2b61A 377 63.77 1t0fA 276 63.83 a.4.5.27,c.52.1.16 112195,112196 2b81A 323 64.79 1qgrA 876 65.13 a.118.1.1 19119 1kl7A 514 65.31 c.79.1.1 72678 2f6kA 307 66.16 c.1.9.15 133047 1ynpA 317 67.66 2rdpA 150 68.57 1kyqA 274 70.46 c.2.1.11,e.37.1.1 73281,73282 2di4A 238 70.78 a.269.1.1 131522 2nuwA 288 72.64 2pmqA 377 73.54 2qcxA 263 73.75 1fsiA 189 73.76 d.61.1.1 39536 2rjoA 332 73.89 2pyxA 526 74.02 1zzkA 82 74.08 d.51.1.1 125909 2p5yA 311 74.63 1r0mA 375 74.63 c.1.11.2,d.54.1.1 104747,104748 3bhpA 60 75.39 1rqbA 539 75.64 a.5.7.2,c.1.10.5 105057,105058 2o6yA 521 75.90 1jyoA 130 76.22 d.198.1.1 67483 2v3gA 283 76.69 1ve5A 311 78.79 c.79.1.1 120013 3crrA 323 80.01 1mxsA 225 81.26 c.1.10.1 91494 1rv3A 483 81.56 c.67.1.4 105101 2h4tA 626 82.46 2ajfA 597 82.99 d.92.1.5 126882 2fa5A 162 83.08 1r6fA 310 83.90 e.46.1.1 97149 3b4uA 294 84.79 2g5cA 281 84.92 a.100.1.12,c.2.1.6 134646,134647 3boqA 160 84.92 1z3xA 238 85.16 a.118.1.22,a.261.1.1 124416,124417 1ppjD 241 85.27 a.3.1.3,f.23.11.1 104258,104259 1aisB 200 85.42 a.74.1.2,a.74.1.2 18384,18385 2yzvA 303 85.43 1zd1A 284 85.75 1hs6A 611 86.27 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1juvA 193 86.28 c.71.1.1 90912 1u32A 293 86.41 d.159.1.3 107631 2p0aA 344 87.87 3cx5D 248 88.53 2hr3A 147 88.82 a.4.5.28 136678 1oxwA 373 88.96 c.19.1.3 87539 2qg7A 458 89.80 1bl3A 160 89.82 c.55.3.2 33655 2hmcA 344 89.94