# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 9.33e-56 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 8.72e-55 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.80e-53 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 6.04e-53 1kb9A 431 7.63e-52 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 2.81e-51 1ezvA 430 3.10e-51 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 6.55e-50 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 1.39e-46 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 5.23e-40 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 1.97e-39 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 5.89e-38 1i1iP 681 0.4805 d.92.1.5 40297 1wyuB 474 0.8141 c.67.1.7 121453 3buvA 326 2.280 3broA 141 2.833 1c7nA 399 3.636 c.67.1.3 34413 2dgmA 466 3.778 c.67.1.6 131508 1m6sA 347 3.907 c.67.1.1 78701 1wovA 250 4.487 a.132.1.1 121124 2hdyA 440 4.881 2hoxA 427 4.894 c.67.1.1 136644 3bpvA 138 5.931 2p4fA 299 5.954 1xi9A 406 6.382 c.67.1.1 115355 2c8mA 262 6.540 1d2fA 390 6.580 c.67.1.3 34411 1w7lA 422 7.503 c.67.1.1 109226 2qfjA 216 7.536 1bw0A 416 7.645 c.67.1.1 34385 1jg8A 347 7.793 c.67.1.1 62946 3bjaA 139 7.974 2o36A 674 8.651 1ynuA 473 8.767 c.67.1.4 123762 3bj6A 152 9.768 2douA 376 9.849 2f2gA 221 10.89 a.132.1.3 132816 1in4A 334 11.76 a.4.5.11,c.37.1.20 62597,62598 2i7qA 402 12.15 2z20A 432 12.64 1kl1A 419 13.58 c.67.1.4 72663 1zybA 232 14.16 a.4.5.4,b.82.3.2 125815,125816 2fa5A 162 14.93 2gxgA 146 15.32 1gdeA 389 15.68 c.67.1.1 60456 2rdpA 150 16.68 1j7lA 264 16.74 d.144.1.6 62697 1vp4A 425 17.18 c.67.1.1 113935 1lk9A 448 17.19 c.67.1.1 78057 3bwnA 391 17.62 3boqA 160 17.98 1m7yA 435 18.02 c.67.1.4 78761 2q83A 346 18.49 3csvA 333 19.00 1zzkA 82 19.25 d.51.1.1 125909 2bbrA 195 19.81 3c5iA 369 20.70 2qr4A 587 20.75 1l5aA 436 20.84 c.43.1.2,c.43.1.2 75923,75924 1jyoA 130 21.50 d.198.1.1 67483 1jf9A 408 22.55 c.67.1.3 62931 2fbhA 146 23.03 a.4.5.28 133245 1f44A 324 23.53 a.60.9.1,d.163.1.1 64982,64983 2hufA 393 24.82 1yadA 221 24.94 1fsiA 189 25.73 d.61.1.1 39536 1yizA 429 26.29 c.67.1.1 123375 1t3iA 420 26.41 c.67.1.3 106354 1bjnA 360 26.42 c.67.1.4 34469 2cxaA 256 27.26 d.108.1.6 130993 2hr3A 147 27.75 a.4.5.28 136678 2ig7A 401 27.86 2d1eA 248 28.20 1dfoA 417 28.74 c.67.1.4 34480 1aisB 200 28.85 a.74.1.2,a.74.1.2 18384,18385 2q4xA 221 28.86 a.132.1.3 139880 1ki1B 352 29.13 a.87.1.1,b.55.1.1 72497,72498 2tysA 268 29.60 c.1.2.4 28572 2c0rA 362 29.88 c.67.1.4 129604 3bhpA 60 30.08 1i6xA 209 30.75 a.4.5.4,b.82.3.2 83673,83674 1rec 201 30.80 2id3A 225 31.16 a.4.1.9,a.121.1.1 137261,137262 1u4qA 322 31.76 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1kqpA 271 31.87 c.26.2.1 72883 1b8gA 429 31.90 c.67.1.4 34499 1jayA 212 32.03 c.2.1.6 66478 2qcxA 263 32.22 1u08A 386 32.48 c.67.1.1 107543 3bddA 142 33.52 1w23A 360 33.85 c.67.1.4 114088 1bj4A 470 34.37 c.67.1.4 34479 1vjeA 166 34.42 d.185.1.2 100807 1htqA 477 34.56 d.15.9.1,d.128.1.1 71035,71036 1ub0A 258 35.80 c.72.1.2 88394 2nyxA 168 35.88 1frb 315 35.90 1lj9A 144 36.46 a.4.5.28 78035 1bl3A 160 36.48 c.55.3.2 33655 2uv0E 175 37.17 1wstA 417 39.97 c.67.1.1 121244 1zejA 293 40.18 2cdnA 201 40.28 c.37.1.1 130289 2di4A 238 40.66 a.269.1.1 131522 1e8aA 91 41.94 a.39.1.2 17188 1ofgA 381 42.19 c.2.1.3,d.81.1.5 30064,39979 2nnnA 140 42.21 3bs9A 87 42.84 1lucB 324 43.04 c.1.16.1 29548 2bvcA 486 43.11 d.15.9.1,d.128.1.1 129243,129244 1rv3A 483 44.63 c.67.1.4 105101 2cohA 202 44.80 a.4.5.4,b.82.3.2 130677,130678 3cg6A 146 45.02 1pmmA 466 45.43 c.67.1.6 94901 1omrA 201 46.16 a.39.1.5 93349 1lnwA 147 47.20 a.4.5.28 78104 2ethA 154 48.01 a.4.5.28 132358 2f6lA 166 48.47 a.130.1.4 133049 1tyhA 248 48.58 a.132.1.3 107458 1a4pA 96 49.69 a.39.1.2 17176 1nw1A 429 49.71 d.144.1.8 86286 2pftA 571 51.04 1d8dA 377 51.82 a.118.6.1 19185 1fxlA 167 52.53 d.58.7.1,d.58.7.1 39183,39184 3cnhA 200 54.12 2fnuA 375 54.43 c.67.1.4 133831 2ze7A 253 55.08 2fyfA 398 55.43 2fd5A 180 56.18 a.4.1.9,a.121.1.1 133291,133292 1z67A 135 57.73 a.259.1.1 124507 2agtA 319 58.11 1ho1A 242 58.19 c.1.24.1 61097 1j7gA 144 58.19 c.110.1.1 84130 1iugA 352 58.46 c.67.1.3 90699 1xjzA 233 59.16 a.132.1.1 122049 2qg7A 458 59.27 2q91A 101 60.32 1txdA 385 61.25 a.87.1.1,b.55.1.1 107422,107423 2h21A 440 61.44 a.166.1.1,b.85.7.3 135976,135977 1nfpA 228 62.84 c.1.16.2 29555 2bv6A 142 62.86 1v2dA 381 63.28 c.67.1.1 108281 1ci9A 392 63.36 e.3.1.1 64767 2fp1A 166 63.53 a.130.1.4 133891 1mdoA 393 63.53 c.67.1.4 79013 1ywfA 296 64.13 c.45.1.5 124144 2dr1A 386 64.92 1xd7A 145 65.05 a.4.5.55 109566 1m32A 366 65.67 c.67.1.3 78508 2fq4A 192 65.73 a.4.1.9,a.121.1.1 133937,133938 2vooA 193 65.73 1j98A 157 65.90 d.185.1.2 62755 1rtwA 220 66.94 a.132.1.3 97823 2gb3A 409 67.36 c.67.1.1 134903 1qlsA 99 67.59 a.39.1.2 17185 2q4eA 362 67.87 2dtjA 178 68.76 2hejA 323 68.79 2qguA 211 69.49 2rgiA 98 70.35 1eg5A 384 70.38 c.67.1.3 34429 1fe0A 68 70.51 d.58.17.1 39345 1o69A 394 70.53 c.67.1.4 92560 2b5hA 200 70.82 b.82.1.19 127894 2p90A 319 70.91 3btxA 204 71.15 3cedA 98 71.27 2b81A 323 71.53 1nvpB 57 72.21 a.32.1.1 92211 1m5wA 243 73.24 c.1.24.1 84836 1lc5A 364 73.50 c.67.1.1 73827 1f5qB 252 73.94 a.74.1.1,a.74.1.1 18362,18363 2e5aA 347 74.82 1rtqA 299 75.41 c.56.5.4 97819 2e2rA 244 76.23 1ihgA 370 76.30 a.118.8.1,b.62.1.1 62380,62381 1v8aA 265 76.50 c.72.1.2 100494 2h2kA 106 77.68 1in6A 334 77.85 a.4.5.11,c.37.1.20 62601,62602 2r2nA 425 77.93 1yjsA 419 78.51 c.67.1.4 123461 1tqxA 227 79.73 c.1.2.2 112614 1j32A 388 80.69 c.67.1.1 77067 1qo0D 196 80.85 c.23.1.3 31125 1wzdA 215 81.31 a.132.1.1 121493 1tltA 319 82.34 c.2.1.3,d.81.1.5 107135,107136 1qj5A 429 82.76 c.67.1.4 34493 1uhnA 189 83.04 a.39.1.5 99399 1s9pA 227 83.05 a.123.1.1 105384 2dtvA 397 83.70 1us0A 316 84.09 c.1.7.1 99850 2cvzA 289 84.87 a.100.1.1,c.2.1.6 130890,130891 2j6gA 266 85.57 2ho3A 325 85.95 2qcoA 210 86.28 2anrA 178 87.53