# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.70e-65 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.47e-63 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.03e-62 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 9.79e-62 1kb9A 431 3.37e-61 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 2.96e-60 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 1.37e-59 1q2lA 939 9.74e-58 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 1.50e-54 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 9.78e-47 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 2.73e-46 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 1.61e-44 1i1iP 681 0.3453 d.92.1.5 40297 1wyuB 474 0.3486 c.67.1.7 121453 2p4fA 299 2.692 2o36A 674 3.231 3buvA 326 3.256 2q83A 346 3.944 1l5aA 436 4.596 c.43.1.2,c.43.1.2 75923,75924 2qfjA 216 4.637 2hdyA 440 4.820 2dgmA 466 5.000 c.67.1.6 131508 1in4A 334 5.158 a.4.5.11,c.37.1.20 62597,62598 1c7nA 399 5.329 c.67.1.3 34413 3d1uA 288 5.381 1d2fA 390 5.435 c.67.1.3 34411 1zybA 232 6.867 a.4.5.4,b.82.3.2 125815,125816 3broA 141 7.195 3csvA 333 7.459 2c8mA 262 8.029 2hoxA 427 8.120 c.67.1.1 136644 1xi9A 406 8.620 c.67.1.1 115355 3bpvA 138 9.587 2pftA 571 9.739 1dfoA 417 9.902 c.67.1.4 34480 2i7qA 402 10.50 1bw0A 416 10.96 c.67.1.1 34385 1w7lA 422 11.13 c.67.1.1 109226 1j7lA 264 11.58 d.144.1.6 62697 1in6A 334 12.37 a.4.5.11,c.37.1.20 62601,62602 1wovA 250 12.60 a.132.1.1 121124 3cjnA 162 12.73 3bwnA 391 12.90 1txdA 385 13.06 a.87.1.1,b.55.1.1 107422,107423 1ki1B 352 13.17 a.87.1.1,b.55.1.1 72497,72498 1f44A 324 15.02 a.60.9.1,d.163.1.1 64982,64983 2z20A 432 15.70 2cohA 202 17.27 a.4.5.4,b.82.3.2 130677,130678 2fa5A 162 17.30 1kl1A 419 18.25 c.67.1.4 72663 3bjaA 139 18.74 1mi3A 322 19.05 c.1.7.1 91274 1fxlA 167 20.02 d.58.7.1,d.58.7.1 39183,39184 1i6xA 209 20.39 a.4.5.4,b.82.3.2 83673,83674 2douA 376 20.41 3c5iA 369 21.67 1y791 680 21.72 3bj6A 152 22.77 1w23A 360 22.84 c.67.1.4 114088 1m7yA 435 23.14 c.67.1.4 78761 1fsiA 189 23.31 d.61.1.1 39536 1htqA 477 23.58 d.15.9.1,d.128.1.1 71035,71036 1zzkA 82 24.90 d.51.1.1 125909 1jyoA 130 25.07 d.198.1.1 67483 2qr4A 587 25.31 1jg8A 347 26.26 c.67.1.1 62946 2bvcA 486 26.33 d.15.9.1,d.128.1.1 129243,129244 1zejA 293 26.47 1fviA 297 26.92 b.40.4.6,d.142.2.1 25364,41578 1m6sA 347 27.80 c.67.1.1 78701 1b8gA 429 28.38 c.67.1.4 34499 2rdpA 150 28.73 1r8gA 372 29.09 d.128.1.3 104845 1ub0A 258 29.71 c.72.1.2 88394 1jayA 212 29.81 c.2.1.6 66478 1mdoA 393 29.92 c.67.1.4 79013 2nnnA 140 30.18 1bjnA 360 30.54 c.67.1.4 34469 1lk9A 448 31.11 c.67.1.1 78057 1hynP 379 32.35 d.112.1.2 61408 1bj4A 470 33.33 c.67.1.4 34479 2gxgA 146 33.50 2cdnA 201 33.92 c.37.1.1 130289 2f2gA 221 34.25 a.132.1.3 132816 2vooA 193 34.93 1rv3A 483 35.98 c.67.1.4 105101 1ihgA 370 36.44 a.118.8.1,b.62.1.1 62380,62381 3bddA 142 37.27 2oo3A 283 37.31 2ag5A 246 37.40 c.2.1.2 126719 1bl3A 160 37.45 c.55.3.2 33655 1yzbA 182 38.44 3boqA 160 39.23 1o69A 394 39.35 c.67.1.4 92560 2hejA 323 39.36 2agaA 190 39.56 2qcxA 263 40.53 1jf9A 408 41.27 c.67.1.3 62931 1rtwA 220 41.82 a.132.1.3 97823 1sxjE 354 42.50 a.80.1.1,c.37.1.20 106089,106090 1kqpA 271 42.55 c.26.2.1 72883 1yadA 221 43.29 1x19A 359 43.85 1qwkA 317 43.97 c.1.7.1 96482 1d8dA 377 46.21 a.118.6.1 19185 1ofgA 381 46.39 c.2.1.3,d.81.1.5 30064,39979 1aisB 200 46.66 a.74.1.2,a.74.1.2 18384,18385 1ynuA 473 47.03 c.67.1.4 123762 2fbhA 146 47.97 a.4.5.28 133245 2hr3A 147 48.34 a.4.5.28 136678 1t0fA 276 50.10 a.4.5.27,c.52.1.16 112195,112196 1vqqA 646 51.28 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2di4A 238 53.68 a.269.1.1 131522 1xd7A 145 53.75 a.4.5.55 109566 2nyxA 168 55.22 1ouvA 273 55.93 a.118.18.1 93570 1qbkB 890 56.01 a.118.1.1 19127 3btxA 204 56.56 1zylA 328 58.16 1tltA 319 58.38 c.2.1.3,d.81.1.5 107135,107136 1k3eA 156 58.62 d.198.1.1 68103 1a0p 290 59.14 2bbrA 195 60.17 1zuaX 317 60.64 1tyhA 248 60.70 a.132.1.3 107458 1w63A 618 60.98 i.23.1.1 109192 1e8aA 91 61.41 a.39.1.2 17188 1mhyB 395 63.24 a.25.1.2 16781 2q4xA 221 63.86 a.132.1.3 139880 1r8sA 164 64.25 c.37.1.8 97247 1vp4A 425 64.36 c.67.1.1 113935 1juvA 193 64.48 c.71.1.1 90912 1ad4A 266 64.77 c.1.21.1 29670 1u08A 386 66.05 c.67.1.1 107543 2q4eA 362 66.76 2qjcA 262 67.41 2cxaA 256 67.71 d.108.1.6 130993 2d2rA 245 68.03 3cnhA 200 69.01 1z3xA 238 69.08 a.118.1.22,a.261.1.1 124416,124417 2ze7A 253 69.97 1m32A 366 70.56 c.67.1.3 78508 1lj9A 144 70.61 a.4.5.28 78035 2id3A 225 70.91 a.4.1.9,a.121.1.1 137261,137262 2vdeA 460 71.80 2tysA 268 72.95 c.1.2.4 28572 3bc8A 450 73.41 2ethA 154 74.04 a.4.5.28 132358 2gnxA 365 74.22 2h21A 440 75.21 a.166.1.1,b.85.7.3 135976,135977 1hw5A 210 76.04 a.4.5.4,b.82.3.2 16098,28137 1f07A 321 76.10 c.1.16.3 59560 2go9A 161 77.29 2grmA 317 78.65 4crxA 322 80.36 a.60.9.1,d.163.1.1 18095,42155 1zin 217 81.50 2q91A 101 83.02 1lnwA 147 83.21 a.4.5.28 78104 3bhpA 60 83.23 1eg5A 384 84.91 c.67.1.3 34429 1v2dA 381 85.66 c.67.1.1 108281 2cvzA 289 85.77 a.100.1.1,c.2.1.6 130890,130891 2c81A 418 86.58 2ogeA 399 86.92 2ia1A 178 88.26 1a4pA 96 89.45 a.39.1.2 17176 3bosA 242 89.66 1qq7A 253 89.90 c.108.1.1 43329