# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.73e-58 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 2.90e-57 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 3.14e-56 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.78e-55 1kb9A 431 7.32e-55 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 5.26e-54 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 7.00e-54 1q2lA 939 2.59e-52 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 2.09e-49 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 7.70e-42 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 1.29e-41 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 3.50e-40 1wyuB 474 0.9026 c.67.1.7 121453 1i1iP 681 1.174 d.92.1.5 40297 1d2fA 390 2.546 c.67.1.3 34411 1c7nA 399 2.999 c.67.1.3 34413 2p4fA 299 4.226 3broA 141 4.526 1xi9A 406 4.950 c.67.1.1 115355 3bpvA 138 5.306 1zybA 232 5.522 a.4.5.4,b.82.3.2 125815,125816 1wovA 250 6.045 a.132.1.1 121124 1w7lA 422 6.127 c.67.1.1 109226 2c8mA 262 6.290 2o36A 674 6.535 2fa5A 162 6.624 2douA 376 6.650 3cjnA 162 7.133 2hoxA 427 7.167 c.67.1.1 136644 1m6sA 347 7.468 c.67.1.1 78701 2i7qA 402 7.778 3csvA 333 7.784 2q83A 346 8.039 3c5iA 369 9.096 2hdyA 440 9.347 3bj6A 152 9.561 1bw0A 416 9.866 c.67.1.1 34385 1f44A 324 10.39 a.60.9.1,d.163.1.1 64982,64983 1jg8A 347 10.44 c.67.1.1 62946 3bjaA 139 11.78 2f2gA 221 12.40 a.132.1.3 132816 2qfjA 216 12.42 1l5aA 436 12.93 c.43.1.2,c.43.1.2 75923,75924 2rdpA 150 12.99 1in4A 334 13.27 a.4.5.11,c.37.1.20 62597,62598 1m7yA 435 13.65 c.67.1.4 78761 2qcxA 263 13.77 1j7lA 264 13.92 d.144.1.6 62697 2hr3A 147 14.05 a.4.5.28 136678 1gdeA 389 14.14 c.67.1.1 60456 1w63A 618 15.50 i.23.1.1 109192 1rtwA 220 16.19 a.132.1.3 97823 1jayA 212 16.72 c.2.1.6 66478 2dgmA 466 17.76 c.67.1.6 131508 2nnnA 140 18.30 1b8gA 429 19.52 c.67.1.4 34499 3bwnA 391 19.56 1aisB 200 19.58 a.74.1.2,a.74.1.2 18384,18385 1fsiA 189 20.32 d.61.1.1 39536 2pftA 571 20.73 3bddA 142 21.45 3boqA 160 21.68 2gxgA 146 21.72 1zzkA 82 22.31 d.51.1.1 125909 2z20A 432 22.89 1tyhA 248 22.97 a.132.1.3 107458 1ynuA 473 23.89 c.67.1.4 123762 1txdA 385 24.98 a.87.1.1,b.55.1.1 107422,107423 1i6xA 209 25.59 a.4.5.4,b.82.3.2 83673,83674 1htqA 477 26.12 d.15.9.1,d.128.1.1 71035,71036 2nyxA 168 26.27 1bjnA 360 26.50 c.67.1.4 34469 2ethA 154 26.98 a.4.5.28 132358 2bvcA 486 27.07 d.15.9.1,d.128.1.1 129243,129244 2bbrA 195 27.12 1y791 680 27.36 1xd7A 145 27.49 a.4.5.55 109566 1u08A 386 27.88 c.67.1.1 107543 1lk9A 448 29.14 c.67.1.1 78057 2id3A 225 29.61 a.4.1.9,a.121.1.1 137261,137262 2fbhA 146 29.64 a.4.5.28 133245 1yizA 429 30.77 c.67.1.1 123375 1ki1B 352 31.30 a.87.1.1,b.55.1.1 72497,72498 1jf9A 408 32.51 c.67.1.3 62931 1vp4A 425 32.73 c.67.1.1 113935 1e8aA 91 33.18 a.39.1.2 17188 1w23A 360 33.53 c.67.1.4 114088 1jyoA 130 35.23 d.198.1.1 67483 2qr4A 587 35.39 1lnwA 147 36.25 a.4.5.28 78104 1nfpA 228 37.37 c.1.16.2 29555 1kl1A 419 37.58 c.67.1.4 72663 1nw1A 429 37.73 d.144.1.8 86286 1dfoA 417 37.81 c.67.1.4 34480 1lj9A 144 38.03 a.4.5.28 78035 1ihgA 370 39.32 a.118.8.1,b.62.1.1 62380,62381 2qg7A 458 39.46 1yadA 221 39.50 3buvA 326 39.86 2d1eA 248 41.12 1rtqA 299 43.59 c.56.5.4 97819 2gnxA 365 43.84 2cdnA 201 44.05 c.37.1.1 130289 2q4xA 221 45.91 a.132.1.3 139880 1wstA 417 45.92 c.67.1.1 121244 1rec 201 46.57 1j7gA 144 46.80 c.110.1.1 84130 1vqqA 646 46.97 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 3bhpA 60 47.06 1j98A 157 47.28 d.185.1.2 62755 1ci9A 392 47.80 e.3.1.1 64767 1m32A 366 48.92 c.67.1.3 78508 1mhyB 395 48.98 a.25.1.2 16781 2ag5A 246 50.43 c.2.1.2 126719 2c40A 312 51.12 2fd5A 180 52.27 a.4.1.9,a.121.1.1 133291,133292 1yakA 263 52.39 a.132.1.3 122833 1t3iA 420 52.50 c.67.1.3 106354 3cedA 98 52.92 2cohA 202 53.04 a.4.5.4,b.82.3.2 130677,130678 1n45A 233 53.11 a.132.1.1 79981 1d8dA 377 53.46 a.118.6.1 19185 1bl3A 160 53.71 c.55.3.2 33655 1lucB 324 54.08 c.1.16.1 29548 1xfrA 128 54.19 1fxlA 167 54.82 d.58.7.1,d.58.7.1 39183,39184 1zejA 293 55.48 1z67A 135 56.28 a.259.1.1 124507 1fe0A 68 56.66 d.58.17.1 39345 3btxA 204 57.47 1jgsA 138 58.30 a.4.5.28 66683 2bv6A 142 58.94 2ct9A 208 59.76 1u5tA 233 60.23 a.4.5.54,a.4.5.54 107684,107685 2r40D 266 60.54 1v2dA 381 64.31 c.67.1.1 108281 2jgzB 260 65.38 2fbiA 142 65.44 a.4.5.28 133246 2b5hA 200 65.60 b.82.1.19 127894 2dtjA 178 66.23 2ig7A 401 66.43 2q91A 101 67.07 1mi3A 322 67.18 c.1.7.1 91274 1yzbA 182 67.35 3bczA 293 67.75 2cxaA 256 67.89 d.108.1.6 130993 2e2rA 244 68.03 2ze7A 253 69.07 1ofgA 381 69.36 c.2.1.3,d.81.1.5 30064,39979 1qlsA 99 69.76 a.39.1.2 17185 1s3jA 155 69.78 a.4.5.28 98437 2hufA 393 70.17 1p5tA 127 70.42 b.55.1.2 94148 2uv0E 175 72.28 2dtvA 397 73.01 2a61A 145 73.35 a.4.5.28 126187 2zfyA 234 74.24 1f5qB 252 74.73 a.74.1.1,a.74.1.1 18362,18363 1iugA 352 74.95 c.67.1.3 90699 1s69A 124 75.18 a.1.1.1 105305 1xjzA 233 75.94 a.132.1.1 122049 1a4pA 96 76.03 a.39.1.2 17176 1rv3A 483 76.79 c.67.1.4 105101 2vooA 193 76.82 2f6lA 166 76.98 a.130.1.4 133049 1yqsA 349 77.18 e.3.1.1 123899 2dr1A 386 77.98 2di4A 238 78.18 a.269.1.1 131522 1vjeA 166 79.79 d.185.1.2 100807 2e5aA 347 80.68 2c0rA 362 81.16 c.67.1.4 129604 2ho1A 252 81.50 1cshA 435 81.66 a.103.1.1 18880 1bj4A 470 81.92 c.67.1.4 34479 1ksoA 101 83.97 a.39.1.2 72926 1cc8A 73 85.84 d.58.17.1 39343 1u32A 293 87.00 d.159.1.3 107631 1hw5A 210 87.16 a.4.5.4,b.82.3.2 16098,28137 1kqpA 271 87.30 c.26.2.1 72883 1lokA 291 88.82 c.56.5.4 78122 3c1vA 113 89.51 2yviA 111 89.85 2tysA 268 89.92 c.1.2.4 28572