# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 5.44e-58 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 7.34e-57 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 6.15e-56 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 4.69e-55 1kb9A 431 1.68e-54 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.19e-53 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 1.74e-53 1q2lA 939 6.22e-52 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 8.20e-49 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.62e-41 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 1.98e-41 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 6.74e-40 1wyuB 474 0.8776 c.67.1.7 121453 1i1iP 681 1.462 d.92.1.5 40297 3broA 141 2.638 1c7nA 399 3.039 c.67.1.3 34413 3bpvA 138 3.201 2p4fA 299 3.611 1d2fA 390 3.766 c.67.1.3 34411 1wovA 250 4.794 a.132.1.1 121124 1m6sA 347 4.908 c.67.1.1 78701 1xi9A 406 5.098 c.67.1.1 115355 3cjnA 162 5.250 2c8mA 262 5.427 2fa5A 162 6.593 2o36A 674 6.660 2i7qA 402 7.184 2hoxA 427 7.591 c.67.1.1 136644 1bw0A 416 7.683 c.67.1.1 34385 3bj6A 152 7.850 1jg8A 347 8.504 c.67.1.1 62946 1w7lA 422 8.859 c.67.1.1 109226 2hdyA 440 9.130 3bjaA 139 9.684 1zybA 232 10.00 a.4.5.4,b.82.3.2 125815,125816 3csvA 333 10.57 3c5iA 369 10.68 1w23A 360 11.64 c.67.1.4 114088 2rdpA 150 11.86 1j7lA 264 11.89 d.144.1.6 62697 2z20A 432 12.10 2douA 376 13.12 1in4A 334 13.87 a.4.5.11,c.37.1.20 62597,62598 2gxgA 146 14.01 1zzkA 82 14.23 d.51.1.1 125909 1fsiA 189 14.69 d.61.1.1 39536 2nyxA 168 14.97 1gdeA 389 14.98 c.67.1.1 60456 2f2gA 221 15.27 a.132.1.3 132816 2qfjA 216 15.31 1aisB 200 15.52 a.74.1.2,a.74.1.2 18384,18385 1bjnA 360 16.11 c.67.1.4 34469 2dgmA 466 16.34 c.67.1.6 131508 2fbhA 146 16.46 a.4.5.28 133245 3bddA 142 17.70 2qcxA 263 17.80 1f44A 324 18.05 a.60.9.1,d.163.1.1 64982,64983 3bwnA 391 18.26 2nnnA 140 18.39 2q83A 346 18.43 3boqA 160 18.88 1m7yA 435 19.20 c.67.1.4 78761 1rtwA 220 19.40 a.132.1.3 97823 1kl1A 419 20.38 c.67.1.4 72663 1lj9A 144 21.12 a.4.5.28 78035 2hr3A 147 21.16 a.4.5.28 136678 2id3A 225 21.41 a.4.1.9,a.121.1.1 137261,137262 2bbrA 195 21.46 2q4xA 221 21.56 a.132.1.3 139880 1htqA 477 21.98 d.15.9.1,d.128.1.1 71035,71036 1lk9A 448 22.12 c.67.1.1 78057 2qr4A 587 24.01 2cdnA 201 25.32 c.37.1.1 130289 1ynuA 473 25.71 c.67.1.4 123762 1l5aA 436 26.84 c.43.1.2,c.43.1.2 75923,75924 1xd7A 145 26.87 a.4.5.55 109566 1i6xA 209 27.87 a.4.5.4,b.82.3.2 83673,83674 1jayA 212 28.19 c.2.1.6 66478 2bvcA 486 28.72 d.15.9.1,d.128.1.1 129243,129244 2cohA 202 29.16 a.4.5.4,b.82.3.2 130677,130678 1s3jA 155 29.16 a.4.5.28 98437 2pftA 571 29.24 1tyhA 248 30.26 a.132.1.3 107458 1yizA 429 30.37 c.67.1.1 123375 1lnwA 147 31.39 a.4.5.28 78104 2ethA 154 32.51 a.4.5.28 132358 1dfoA 417 32.76 c.67.1.4 34480 1lucB 324 32.99 c.1.16.1 29548 1bl3A 160 33.22 c.55.3.2 33655 1u08A 386 33.51 c.67.1.1 107543 1e8aA 91 33.97 a.39.1.2 17188 3bhpA 60 33.99 2cxaA 256 34.64 d.108.1.6 130993 1jyoA 130 35.48 d.198.1.1 67483 1b8gA 429 35.79 c.67.1.4 34499 2qg7A 458 37.54 1y791 680 37.68 1yadA 221 37.74 1jf9A 408 38.46 c.67.1.3 62931 1ki1B 352 38.52 a.87.1.1,b.55.1.1 72497,72498 3buvA 326 39.10 3cedA 98 39.79 2c0rA 362 39.86 c.67.1.4 129604 2fbiA 142 41.38 a.4.5.28 133246 1d8dA 377 41.39 a.118.6.1 19185 2vooA 193 41.67 2d1eA 248 42.44 1t3iA 420 43.47 c.67.1.3 106354 1ihgA 370 43.47 a.118.8.1,b.62.1.1 62380,62381 2di4A 238 43.49 a.269.1.1 131522 2qcoA 210 43.55 2fd5A 180 45.03 a.4.1.9,a.121.1.1 133291,133292 1w63A 618 45.05 i.23.1.1 109192 2ct9A 208 45.60 2a61A 145 46.90 a.4.5.28 126187 1bj4A 470 48.04 c.67.1.4 34479 1nw1A 429 48.23 d.144.1.8 86286 1n45A 233 49.14 a.132.1.1 79981 1eg5A 384 49.36 c.67.1.3 34429 1vp4A 425 50.80 c.67.1.1 113935 1ci9A 392 51.02 e.3.1.1 64767 1ofgA 381 51.89 c.2.1.3,d.81.1.5 30064,39979 1fxlA 167 52.14 d.58.7.1,d.58.7.1 39183,39184 3d1uA 288 52.23 2tysA 268 52.58 c.1.2.4 28572 1wstA 417 52.86 c.67.1.1 121244 1yakA 263 54.18 a.132.1.3 122833 1j7gA 144 54.99 c.110.1.1 84130 1xnfA 275 55.37 a.118.8.1 115580 1v2dA 381 55.38 c.67.1.1 108281 1j98A 157 55.70 d.185.1.2 62755 2bv6A 142 55.93 1m32A 366 55.94 c.67.1.3 78508 2cvzA 289 56.11 a.100.1.1,c.2.1.6 130890,130891 1txdA 385 56.19 a.87.1.1,b.55.1.1 107422,107423 1k3eA 156 56.76 d.198.1.1 68103 1vjeA 166 57.27 d.185.1.2 100807 1fe0A 68 57.37 d.58.17.1 39345 2fq4A 192 57.74 a.4.1.9,a.121.1.1 133937,133938 1a4pA 96 57.78 a.39.1.2 17176 1rtqA 299 58.03 c.56.5.4 97819 2c40A 312 58.89 2anrA 178 59.74 1ub0A 258 60.25 c.72.1.2 88394 1kqpA 271 61.59 c.26.2.1 72883 1mdoA 393 61.71 c.67.1.4 79013 1nfpA 228 61.83 c.1.16.2 29555 3btxA 204 62.08 2dtjA 178 62.11 1zejA 293 62.31 1q3eA 207 62.62 b.82.3.2 95669 2hufA 393 63.71 1s1eA 224 64.25 a.39.1.5 112007 1vqqA 646 65.45 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1rv3A 483 65.52 c.67.1.4 105101 1rec 201 67.38 2gnxA 365 67.55 3bs9A 87 71.89 2j6gA 266 71.90 2h21A 440 72.39 a.166.1.1,b.85.7.3 135976,135977 2q91A 101 72.72 1o69A 394 73.17 c.67.1.4 92560 1z67A 135 74.17 a.259.1.1 124507 1mi3A 322 74.81 c.1.7.1 91274 1lc5A 364 75.30 c.67.1.1 73827 2e5aA 347 75.39 2r2nA 425 75.55 2qrrA 101 76.65 2dr1A 386 77.01 2b5hA 200 77.45 b.82.1.19 127894 3bczA 293 78.73 1qlsA 99 80.33 a.39.1.2 17185 1a0p 290 81.51 1s69A 124 82.61 a.1.1.1 105305 1xjzA 233 84.59 a.132.1.1 122049 1iugA 352 85.34 c.67.1.3 90699 3bu8A 235 86.49 2ia1A 178 86.53 1tqxA 227 89.12 c.1.2.2 112614