# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.12e-48 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 6.24e-47 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 4.28e-46 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 7.75e-46 1kb9A 431 1.30e-45 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 4.03e-45 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 7.69e-41 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 1.23e-39 1kb9B 352 1.06e-34 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 1.13e-34 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 1.73e-34 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3cx5B 352 1.17e-33 1wyuB 474 0.4973 c.67.1.7 121453 1tqxA 227 1.578 c.1.2.2 112614 1vp4A 425 1.810 c.67.1.1 113935 2o36A 674 1.953 2qcxA 263 3.471 2douA 376 3.518 1ki1B 352 3.681 a.87.1.1,b.55.1.1 72497,72498 1i1iP 681 3.829 d.92.1.5 40297 1rtwA 220 4.002 a.132.1.3 97823 2z20A 432 4.226 2dtvA 397 4.390 1gdeA 389 4.581 c.67.1.1 60456 1ynuA 473 5.085 c.67.1.4 123762 1d2fA 390 5.348 c.67.1.3 34411 1c7nA 399 5.592 c.67.1.3 34413 1tyhA 248 5.794 a.132.1.3 107458 1xi3A 215 6.370 c.1.3.1 109601 1m7yA 435 6.751 c.67.1.4 78761 1wstA 417 8.856 c.67.1.1 121244 2agaA 190 8.910 1f37A 110 8.998 c.47.1.11 33088 1b8gA 429 9.214 c.67.1.4 34499 1s4bP 674 9.509 d.92.1.5 105252 2zg5A 397 10.09 2hdyA 440 11.03 2hoxA 427 11.36 c.67.1.1 136644 1v33A 366 11.73 d.264.1.1 100278 1l5aA 436 11.78 c.43.1.2,c.43.1.2 75923,75924 1u08A 386 12.02 c.67.1.1 107543 3bhwA 209 12.11 2q4uA 272 12.16 1mi3A 322 12.59 c.1.7.1 91274 1h1yA 228 13.33 c.1.2.2 76506 1yakA 263 13.33 a.132.1.3 122833 1uxjA 309 14.64 c.2.1.5,d.162.1.1 108112,108113 2hufA 393 14.78 1xi9A 406 14.97 c.67.1.1 115355 1u4qA 322 16.83 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1js3A 486 17.03 c.67.1.6 67215 1wovA 250 17.59 a.132.1.1 121124 1t3iA 420 17.95 c.67.1.3 106354 1bw0A 416 18.42 c.67.1.1 34385 2q83A 346 18.55 1lk9A 448 19.70 c.67.1.1 78057 2hejA 323 20.08 1txdA 385 20.32 a.87.1.1,b.55.1.1 107422,107423 1w7lA 422 20.72 c.67.1.1 109226 2i06A 309 21.52 3bc8A 450 22.13 2qipA 165 22.53 2gb3A 409 24.05 c.67.1.1 134903 1qo0D 196 25.80 c.23.1.3 31125 2hehA 387 26.95 1o4sA 389 27.07 c.67.1.1 86620 1qgrA 876 27.60 a.118.1.1 19119 3bwnA 391 28.12 1yizA 429 29.34 c.67.1.1 123375 1lc5A 364 30.14 c.67.1.1 73827 2r2nA 425 31.93 1tltA 319 31.97 c.2.1.3,d.81.1.5 107135,107136 1z72A 225 34.19 a.132.1.3 124583 1m6sA 347 34.50 c.67.1.1 78701 1wchA 315 35.86 c.45.1.2 114508 1s1pA 331 36.23 c.1.7.1 98350 1pmmA 466 36.75 c.67.1.6 94901 1yadA 221 39.29 1dozA 309 40.00 c.92.1.1 35592 1hw6A 278 40.01 c.1.7.1 61296 2rffA 111 41.20 1m32A 366 41.92 c.67.1.3 78508 1iugA 352 43.00 c.67.1.3 90699 1bjnA 360 44.28 c.67.1.4 34469 2ewdA 317 44.40 1zybA 232 44.59 a.4.5.4,b.82.3.2 125815,125816 1ofgA 381 44.98 c.2.1.3,d.81.1.5 30064,39979 1f44A 324 45.49 a.60.9.1,d.163.1.1 64982,64983 2ou3A 161 45.97 2gauA 232 46.68 a.4.5.4,b.82.3.2 134894,134895 2p90A 319 46.75 1vbjA 281 46.86 1frb 315 47.30 1vjoA 393 47.46 c.67.1.3 100827 1qgoA 264 47.63 c.92.1.2 35596 1jg8A 347 47.97 c.67.1.1 62946 2ibtA 421 48.15 c.66.1.27,d.287.1.1 137205,137206 2bbrA 195 48.83 2agtA 319 49.14 1ur5A 309 49.58 c.2.1.5,d.162.1.1 99807,99808 2dztA 248 49.59 1qwkA 317 50.04 c.1.7.1 96482 3buvA 326 50.56 1qsaA 618 52.35 a.118.5.1,d.2.1.6 19182,36988 1xbyA 216 53.45 c.1.2.3 121846 2grmA 317 54.40 2dr1A 386 54.55 2tpsA 227 54.82 c.1.3.1 28591 2q4eA 362 56.95 1j32A 388 57.35 c.67.1.1 77067 1dbhA 354 57.49 a.87.1.1,b.55.1.1 18514,26967 1dpgA 485 57.85 c.2.1.3,d.81.1.5 30074,39989 2z15A 130 58.14 2p4fA 299 59.27 1vqqA 646 59.30 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1wyuA 438 59.69 c.67.1.7 121452 1v2dA 381 60.88 c.67.1.1 108281 2f2gA 221 61.31 a.132.1.3 132816 1bg2 325 62.70 2vg0A 227 63.31 3ceaA 346 63.62 1pii 452 64.28 2d0bA 310 64.99 3c5iA 369 67.27 1bjwA 382 67.38 c.67.1.1 34349 1i6xA 209 67.53 a.4.5.4,b.82.3.2 83673,83674 1qsoA 149 69.17 d.108.1.1 40812 1dbtA 239 69.22 c.1.2.3 28539 1a5zA 319 69.75 c.2.1.5,d.162.1.1 30181,42148 1ynpA 317 70.41 1yioA 208 70.48 a.4.6.2,c.23.1.1 123326,123327 1eg5A 384 71.60 c.67.1.3 34429 2qg7A 458 72.07 2cblA 305 72.14 a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 2do9A 115 72.48 3bosA 242 72.55 1jf9A 408 73.68 c.67.1.3 62931 1mdoA 393 73.77 c.67.1.4 79013 1yzbA 182 74.22 1jh6A 189 74.70 d.61.1.1 66707 1xfrA 128 78.34 1kyzA 365 79.44 a.4.5.29,c.66.1.12 73312,73313 1b5pA 385 80.24 c.67.1.1 90403 1in4A 334 81.07 a.4.5.11,c.37.1.20 62597,62598 2ccmA 191 81.63 2h1vA 310 82.57 2okjA 504 83.40 1jf3A 147 83.62 a.1.1.2 71642 1qkkA 155 83.69 c.23.1.1 31104 1ad4A 266 87.03 c.1.21.1 29670 3ce7A 107 88.44 1mk4A 157 89.06 d.108.1.1 84979