# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 3.23e-48 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.30e-46 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 3.07e-46 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.62e-45 1kb9A 431 3.31e-45 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 9.49e-45 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 5.07e-42 1q2lA 939 1.00e-41 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 3.91e-38 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 6.55e-34 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 2.15e-33 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 2.30e-33 1wyuB 474 0.1125 c.67.1.7 121453 2z20A 432 0.9259 1c7nA 399 1.597 c.67.1.3 34413 1gdeA 389 1.680 c.67.1.1 60456 2hdyA 440 1.818 1l5aA 436 2.539 c.43.1.2,c.43.1.2 75923,75924 1m7yA 435 2.609 c.67.1.4 78761 1w7lA 422 2.757 c.67.1.1 109226 1txdA 385 2.952 a.87.1.1,b.55.1.1 107422,107423 1ynuA 473 3.014 c.67.1.4 123762 1xi9A 406 3.731 c.67.1.1 115355 1tqxA 227 4.239 c.1.2.2 112614 2douA 376 4.998 1yizA 429 5.014 c.67.1.1 123375 1b8gA 429 5.107 c.67.1.4 34499 1h1yA 228 5.135 c.1.2.2 76506 1bw0A 416 5.762 c.67.1.1 34385 3buvA 326 5.784 1u08A 386 5.870 c.67.1.1 107543 2hoxA 427 6.026 c.67.1.1 136644 2p4fA 299 6.119 1d2fA 390 6.529 c.67.1.3 34411 1vp4A 425 7.131 c.67.1.1 113935 2o36A 674 7.411 1lk9A 448 9.674 c.67.1.1 78057 1zybA 232 11.45 a.4.5.4,b.82.3.2 125815,125816 2dgmA 466 11.51 c.67.1.6 131508 1mi3A 322 12.47 c.1.7.1 91274 1w63A 618 12.76 i.23.1.1 109192 2zg5A 397 12.97 2gb3A 409 13.30 c.67.1.1 134903 1xi3A 215 14.18 c.1.3.1 109601 1jf9A 408 14.97 c.67.1.3 62931 2gauA 232 15.15 a.4.5.4,b.82.3.2 134894,134895 1wstA 417 15.54 c.67.1.1 121244 1o3yA 166 15.62 c.37.1.8 86618 1m6sA 347 15.82 c.67.1.1 78701 3bc8A 450 16.12 1lc5A 364 16.42 c.67.1.1 73827 2hejA 323 16.59 1b5pA 385 16.86 c.67.1.1 90403 1vjoA 393 16.88 c.67.1.3 100827 1i1iP 681 17.13 d.92.1.5 40297 1js3A 486 17.21 c.67.1.6 67215 1ki1B 352 17.95 a.87.1.1,b.55.1.1 72497,72498 1m32A 366 18.00 c.67.1.3 78508 1v2dA 381 18.30 c.67.1.1 108281 1bjwA 382 18.37 c.67.1.1 34349 2dtvA 397 19.03 1nm8A 616 20.03 c.43.1.3,c.43.1.3 85872,85873 1pmmA 466 21.53 c.67.1.6 94901 1jg8A 347 22.03 c.67.1.1 62946 1o4sA 389 22.18 c.67.1.1 86620 1nfpA 228 22.79 c.1.16.2 29555 2jg2A 422 23.20 1w23A 360 24.10 c.67.1.4 114088 1xbyA 216 24.15 c.1.2.3 121846 1yadA 221 25.06 1t3iA 420 25.56 c.67.1.3 106354 3bwnA 391 25.78 2q4uA 272 25.91 2ag5A 246 26.26 c.2.1.2 126719 2csgA 424 26.68 b.82.2.12 130768 1zejA 293 27.55 1r8sA 164 27.78 c.37.1.8 97247 2qcxA 263 28.48 1wyuA 438 29.29 c.67.1.7 121452 2r2nA 425 33.92 2vg0A 227 36.08 1g67A 225 36.40 c.1.3.1 60311 1a5zA 319 36.75 c.2.1.5,d.162.1.1 30181,42148 1frb 315 37.38 1ofgA 381 37.63 c.2.1.3,d.81.1.5 30064,39979 2o0rA 411 37.82 2agtA 319 39.74 1eg5A 384 41.15 c.67.1.3 34429 1zzkA 82 41.47 d.51.1.1 125909 3crrA 323 42.18 2qdjA 304 45.91 2dgkA 452 46.03 1zuaX 317 46.40 1ntyA 311 46.61 a.87.1.1,b.55.1.1 103873,103874 1hynP 379 48.93 d.112.1.2 61408 1bjnA 360 49.10 c.67.1.4 34469 1y63A 184 50.70 c.37.1.1 116494 2i88A 191 50.80 1vbjA 281 51.20 1ycdA 243 52.04 2g2cA 167 54.67 c.57.1.1 134535 1iugA 352 54.72 c.67.1.3 90699 1in4A 334 54.89 a.4.5.11,c.37.1.20 62597,62598 1hurA 180 55.50 c.37.1.8 32052 2q4eA 362 56.72 1arsA 396 57.68 c.67.1.1 34287 1juvA 193 58.26 c.71.1.1 90912 1fadA 99 59.73 a.77.1.2 18428 2qgnA 322 59.85 1tyhA 248 63.34 a.132.1.3 107458 2yviA 111 63.71 1uxjA 309 65.25 c.2.1.5,d.162.1.1 108112,108113 2agaA 190 65.79 2dtjA 178 65.95 1us0A 316 67.12 c.1.7.1 99850 1fsiA 189 67.20 d.61.1.1 39536 2hufA 393 67.31 1y791 680 67.43 2awiA 317 67.75 a.35.1.11,a.118.8.4 127435,127436 2q7wA 396 67.82 1yzbA 182 67.88 3b46A 447 67.94 1u7eB 154 68.32 2glfA 450 69.81 2dorA 311 69.99 c.1.4.1 28593 1ek0A 170 71.64 c.37.1.8 32076 2dztA 248 72.58 2bbrA 195 74.09 2jgpA 520 74.89 2do9A 115 75.99 2b5hA 200 76.95 b.82.1.19 127894 1f44A 324 77.98 a.60.9.1,d.163.1.1 64982,64983 1vqqA 646 79.76 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1j32A 388 80.57 c.67.1.1 77067 2ewdA 317 81.69 1zemA 262 83.42 c.2.1.2 124984 2hiyA 183 84.96 1tpfA 250 86.80 c.1.1.1 28467 1bs0A 384 87.63 c.67.1.4 34490