# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.12e-34 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 6.82e-34 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 6.94e-33 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 5.58e-31 1ezvA 430 9.01e-31 d.185.1.1,d.185.1.1 59541,59542 1kb9A 431 1.28e-30 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 2.60e-26 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 6.40e-26 3cx5B 352 1.42e-20 2fgeA 995 1.65e-20 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 2.77e-18 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 2.78e-17 d.185.1.1,d.185.1.1 59543,59544 1hr6A 475 6.45e-09 d.185.1.1,d.185.1.1 61164,61165 1dar 691 2.302 2qg7A 458 2.561 2dy1A 665 2.604 2p4fA 299 5.099 2ppqA 322 5.275 2pulA 397 6.219 1j7lA 264 7.731 d.144.1.6 62697 1vl2A 421 8.244 c.26.2.1,d.210.1.1 108708,108709 1g8mA 593 8.520 c.24.1.3,c.97.1.4 60371,60372 1hynP 379 9.098 d.112.1.2 61408 3c5iA 369 9.466 1v5xA 203 9.836 c.1.2.4 100377 1lkdA 297 12.64 d.32.1.3,d.32.1.3 78059,78060 2r7jA 317 12.75 1oyzA 280 13.21 a.118.1.16 93775 1l5aA 436 14.47 c.43.1.2,c.43.1.2 75923,75924 2bkkA 264 14.72 1zybA 232 15.30 a.4.5.4,b.82.3.2 125815,125816 1han 297 15.51 1zejA 293 17.21 2bm0A 691 17.80 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2jgqA 233 21.03 2vdwB 287 21.28 2ig7A 401 21.57 1j98A 157 21.61 d.185.1.2 62755 1vs3A 249 23.25 1kw3B 292 24.23 d.32.1.3,d.32.1.3 77549,77550 2v7bA 529 24.32 1ouvA 273 26.11 a.118.18.1 93570 1nd4A 264 26.18 d.144.1.6 91815 1us0A 316 28.92 c.1.7.1 99850 1tw3A 360 29.97 a.4.5.29,c.66.1.12 107373,107374 2is6A 680 30.00 2d0bA 310 33.95 1dj0A 264 34.19 d.265.1.1 90337 1l9vA 317 34.48 d.13.2.1,d.216.1.1 73760,73761 1frb 315 34.94 2b6cA 220 36.49 a.118.1.17 127983 2q83A 346 37.69 2ie4A 589 38.28 a.118.1.2 137291 2p8bA 369 38.72 1vbjA 281 39.07 2cxnA 557 39.54 3craA 265 43.79 2h6dA 276 44.70 1j96A 323 48.33 c.1.7.1 71616 1zuaX 317 49.66 1cuk 203 52.47 1yqgA 263 52.94 2hejA 323 53.11 2c8mA 262 53.47 2ez2A 456 53.84 2cmwA 310 53.94 1korA 400 55.41 c.26.2.1,d.210.1.1 72824,72825 2c4eA 302 56.22 1p3dA 475 56.27 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2v95A 371 56.38 1p4fA 293 57.39 d.144.1.7 104063 1j6wA 175 57.85 d.185.1.2 62663 3d0cA 314 58.12 2zadA 345 58.91 1ho1A 242 59.39 c.1.24.1 61097 1ax4A 467 59.77 c.67.1.2 34391 2i7qA 402 61.34 2p0lA 288 62.15 2olpA 152 62.59 2oxcA 230 63.50 2exrA 524 64.17 1mzhA 225 64.82 c.1.10.1 79698 2cohA 202 65.45 a.4.5.4,b.82.3.2 130677,130678 1qlpA 394 66.11 e.1.1.1 42628 1j09A 468 66.14 a.97.1.1,c.26.1.1 77025,77026 1xkpB 124 66.40 d.198.1.1 122087 2pywA 420 68.87 1gln 468 68.94 2rdxA 379 70.73 1cukA 203 70.87 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2oayA 391 71.02 1xkyA 301 71.10 c.1.10.1 122094 1nal1 297 71.46 1xxlA 239 72.71 c.66.1.41 116203 1ynpA 317 73.24 2z0mA 337 73.69 3b4uA 294 75.73 1ub3A 220 76.55 c.1.10.1 88395 2d1sA 548 77.06 2bg5A 324 77.37 2qptA 550 77.62 1w1oA 534 77.72 d.58.32.4,d.145.1.1 109071,109072 2zcwA 202 78.20 2pceA 386 79.94 1vecA 206 80.28 c.37.1.19 100575 3bq5A 766 82.07 1uw4B 248 83.28 a.118.1.14 100072 2ip2A 334 83.90 1dceB 331 84.25 a.102.4.3 18872 1nsj 205 87.45 2h1rA 299 87.80 1dceA 567 88.83 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1twfK 120 88.89 d.74.3.2 112736 3csvA 333 89.81