Best Alignments for T0425

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1jwqA	5.1989e-24	1jwqA/T0425-1jwqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.5.6
1xovA	3.1093e-22	1xovA/T0425-1xovA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.11.4 c.56.5.6
1fnoA	1.5854e+01	1fnoA/T0425-1fnoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.19.1 c.56.5.4
3ce9A	1.8924e+01	3ce9A/T0425-3ce9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fb2A	1.9925e+01	2fb2A/T0425-2fb2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bijA	2.3797e+01	3bijA/T0425-3bijA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1icpA	2.6387e+01	1icpA/T0425-1icpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1o2dA	3.1299e+01	1o2dA/T0425-1o2dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.22.1.2
1sr4B	3.5578e+01	1sr4B/T0425-1sr4B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.151.1.1
1yqeA	3.5670e+01	1yqeA/T0425-1yqeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.7.1
1yw4A	3.7416e+01	1yw4A/T0425-1yw4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.5.7
1jq5A	3.8252e+01	1jq5A/T0425-1jq5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.22.1.2
2rbkA	3.8269e+01	2rbkA/T0425-2rbkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a5hA	3.9700e+01	2a5hA/T0425-2a5hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cp8A	4.1457e+01	2cp8A/T0425-2cp8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pgfA	4.3446e+01	2pgfA/T0425-2pgfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vljA	4.3545e+01	1vljA/T0425-1vljA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.22.1.2
3pmgA	4.3886e+01	3pmgA/T0425-3pmgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
1u0tA	4.5336e+01	1u0tA/T0425-1u0tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.52.1.1
2nxfA	4.5475e+01	2nxfA/T0425-2nxfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001