# List of top-scoring protein chains for T0425.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jwqA	179	1.07e-21	c.56.5.6	90921
1xovA	326	5.54e-08	b.34.11.4,c.56.5.6	122206,122207
1wa3A	205	8.083	c.1.10.1	120802
1vlwA	217	8.957	c.1.10.1	108868
2jmpA	107	12.90		
1nt0A	286	12.90	b.23.1.1,b.23.1.1,g.3.11.1	86143,86144,86145
3b5nD	64	15.33		
2ywxA	157	15.37		
1iudA	380	22.58	c.94.1.1	35786
1mdp1	363	26.39		
1ra0A	430	29.04	b.92.1.2,c.1.9.5	111756,111757
1k6wA	426	29.29	b.92.1.2,c.1.9.5	68236,68237
1mpbA	370	29.74	c.94.1.1	35780
1r9zA	430	29.75	b.92.1.2,c.1.9.5	111754,111755
1ezoA	370	29.97	c.94.1.1	59539
1mh3A	421	30.15	a.4.1.1,c.94.1.1	79112,79113
1a7lA	389	30.20	c.94.1.1	35787
1ra5A	430	30.20	b.92.1.2,c.1.9.5	111759,111760
1mdqA	371	30.26	c.94.1.1	35783
1nl5A	366	30.27	c.94.1.1	91953
1n3xA	366	30.29	c.94.1.1	91609
1t0kA	381	30.30	c.94.1.1	106214
2ok2A	402	30.33		
1fqbA	370	30.49	c.94.1.1	59985
1ytvA	366	30.54	c.94.1.1	124016
1anfA	370	30.57	c.94.1.1	35776
1jvyA	372	30.78	c.94.1.1	63308
1nmuA	382	30.92	c.94.1.1	80665
1r6zA	509	31.38	b.34.14.1,c.94.1.1	97169,97170
1laxA	370	31.42	c.94.1.1	84576
1svxB	395	32.49	c.94.1.1	106059
1sr4B	261	33.00	d.151.1.1	105949
3c4mA	539	33.80		
1hsjA	487	34.50	a.4.5.28,c.94.1.1	61237,61238
2vgqA	477	36.27		
2ic4A	187	36.38		
1y4cA	494	39.65		
2obgA	461	40.69		
2uwnA	187	41.94		
1gvfA	286	47.60	c.1.10.2	70599
1ziuA	370	48.50	c.94.1.1	125138
2f2fB	283	51.29	d.151.1.1	132811
1i9sA	210	52.06	c.45.1.1	62099
1szbA	170	56.31	b.23.1.1,g.3.11.1	106145,106146
1bvp1	349	57.47		
2hw8A	228	65.83		
2cp8A	54	66.62	a.5.2.1	130695
2crlA	98	70.37		
1ypxA	375	70.64		
2v49C	229	71.64		
1rc6A	261	77.35	b.82.1.11	97287
2d6mA	159	77.70		
2d6oX	159	78.02		
2fblA	153	78.49	d.63.1.2	133249
1sx7A	164	80.54	d.2.1.3	112140
2d3jA	157	86.28		
2vadA	223	86.55		
2gb3A	409	87.98	c.67.1.1	134903
1mg1A	450	88.26	c.94.1.1,h.3.2.1	35790,45753