# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.96e-25 c.56.5.6 90921 1xovA 326 2.93e-23 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 1.100 3ce9A 354 3.025 1fnoA 417 4.137 d.58.19.1,c.56.5.4 70145,75841 2pgfA 371 7.218 1o2dA 371 7.796 e.22.1.2 86591 3bijA 285 8.150 1vljA 407 8.579 e.22.1.2 108832 1rrmA 386 8.671 e.22.1.2 105081 3pmgA 561 9.172 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2a5hA 416 9.224 1ka9H 200 10.92 c.23.16.1 77308 1jq5A 370 11.52 e.22.1.2 67084 2qt3A 403 11.81 1edgA 380 12.93 c.1.8.3 28807 1yw4A 341 14.83 c.56.5.7 124131 2a0mA 316 15.67 c.42.1.1 125960 2ywxA 157 19.28 1kfiA 572 20.93 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 2ywuA 181 21.10 1nmsA 249 21.68 c.17.1.1 85879 2fp3A 316 22.13 1iow 306 23.17 1rpxA 230 24.11 c.1.2.2 28536 2fiuA 99 24.35 d.58.4.16 133537 2ywjA 186 25.41 1u0tA 307 25.74 e.52.1.1 107567 1eyrA 228 26.72 c.68.1.13 34514 1l2uA 245 27.27 c.1.2.3 73516 2arkA 188 27.30 c.23.5.8 127202 2dumA 170 27.33 2dy0A 190 28.29 1oj7A 408 28.30 e.22.1.2 103971 2rbkA 261 28.36 1ig3A 263 29.51 b.82.6.1,c.100.1.1 62358,62359 2o3aA 178 30.11 1ta9A 450 30.13 1o1xA 155 30.16 c.121.1.1 86553 1vixA 420 30.41 c.56.5.4,d.58.19.1 100777,100778 1xngA 268 30.44 c.26.2.1 122186 1yqeA 282 30.91 c.56.7.1 123879 1k20A 310 34.64 c.107.1.1 68027 1wqaA 455 36.51 1vhoA 346 40.02 b.49.3.1,c.56.5.4 100694,100695 1ydnA 295 44.81 2nxfA 322 46.00 2p41A 305 46.22 3bghA 236 47.12 2i02A 148 47.95 b.45.1.1 136936 1fs1B 141 48.51 a.157.1.1,d.42.1.1 19252,38664 1kbjA 412 48.92 c.1.4.1 72280 2q3bA 313 50.10 1sr4B 261 50.12 d.151.1.1 105949 2tpsA 227 53.97 c.1.3.1 28591 1uslA 170 54.50 c.121.1.1 99871 1nvmA 345 55.96 a.5.7.1,c.1.10.5 86249,86250 1bn6A 294 55.99 c.69.1.8 34678 1tq8A 163 56.19 c.26.2.4 107204 1f5sA 211 56.77 c.108.1.4 59656 1euaA 213 58.56 c.1.10.1 29155 1ho1A 242 59.93 c.1.24.1 61097 2yyuA 246 60.83 1gsjA 258 61.40 c.73.1.2 70397 2oczA 231 63.73 1eg5A 384 66.04 c.67.1.3 34429 1dbtA 239 67.62 c.1.2.3 28539 2rb7A 364 71.77 1odzA 386 72.09 c.1.8.3 86889 2jgnA 185 72.14 2f62A 161 72.71 c.23.14.1 133021 1zunA 325 74.10 c.26.2.2 125676 2e18A 257 74.76 1kuuA 202 78.18 d.153.2.1 73019 2f7lA 455 78.25 2aebA 322 79.72 c.42.1.1 126617 2gt1A 326 80.99 2z0hA 197 81.89 1bvwA 360 82.18 c.6.1.1 30668 1p3wA 404 82.99 c.67.1.3 87752 1qjwA 365 84.17 c.6.1.1 30657 1smlA 269 84.68 d.157.1.1 42053 1tezA 474 85.11 a.99.1.1,c.28.1.1 112409,112410 2fhqA 141 87.03 b.45.1.1 133497 1evlA 401 87.20 c.51.1.1,d.104.1.1 33202,40751 1n2eA 300 88.00 c.26.1.4 85268 1b9dA 163 88.49 c.55.3.2 33649 1h7eA 245 88.87 c.68.1.13 60717 1aj2 282 88.98 1usgA 346 89.23 c.93.1.1 99864 1atiA 505 89.26 c.51.1.1,d.104.1.1 33196,40745 1ei6A 406 89.98 c.76.1.4 90443