# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.90e-23 c.56.5.6 90921 1xovA 326 2.13e-21 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 2.756 1fnoA 417 3.892 d.58.19.1,c.56.5.4 70145,75841 3pmgA 561 6.247 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1u0tA 307 7.406 e.52.1.1 107567 1yqeA 282 7.967 c.56.7.1 123879 2a5hA 416 10.95 1kfiA 572 11.56 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 3ce9A 354 11.81 2rbkA 261 13.52 1o2dA 371 13.97 e.22.1.2 86591 2pgfA 371 16.14 3bijA 285 18.38 2a0mA 316 18.43 c.42.1.1 125960 1vljA 407 23.86 e.22.1.2 108832 1lt8A 406 24.47 c.1.26.1 78186 1ig3A 263 25.09 b.82.6.1,c.100.1.1 62358,62359 1xngA 268 26.45 c.26.2.1 122186 1edgA 380 27.36 c.1.8.3 28807 1ho1A 242 27.67 c.1.24.1 61097 1tezA 474 28.09 a.99.1.1,c.28.1.1 112409,112410 1wqaA 455 28.50 1vajA 214 29.05 d.309.1.1 119907 1vixA 420 31.14 c.56.5.4,d.58.19.1 100777,100778 1tq8A 163 31.24 c.26.2.4 107204 1k20A 310 32.11 c.107.1.1 68027 2aeeA 211 32.45 c.61.1.1 126620 1rpxA 230 32.45 c.1.2.2 28536 1sr4B 261 32.81 d.151.1.1 105949 1fs1B 141 35.42 a.157.1.1,d.42.1.1 19252,38664 2e18A 257 35.86 2ywxA 157 36.75 2rb7A 364 38.47 2fiuA 99 38.70 d.58.4.16 133537 1yw4A 341 39.21 c.56.5.7 124131 1b9dA 163 39.28 c.55.3.2 33649 1euaA 213 39.42 c.1.10.1 29155 2qt3A 403 39.53 2arkA 188 39.66 c.23.5.8 127202 3cu2A 237 40.03 1odzA 386 40.07 c.1.8.3 86889 2nxfA 322 40.36 2o3aA 178 42.09 2dy0A 190 42.80 1iow 306 43.20 1gsjA 258 43.33 c.73.1.2 70397 1jq5A 370 43.56 e.22.1.2 67084 2jgnA 185 45.12 2q3bA 313 47.16 1rrmA 386 47.63 e.22.1.2 105081 1f5sA 211 49.49 c.108.1.4 59656 1uaaA 673 50.20 c.37.1.19,c.37.1.19 32401,32402 1ka9H 200 50.38 c.23.16.1 77308 2dumA 170 50.57 3bghA 236 53.39 2anpA 291 53.50 c.56.5.4 127056 1cg2A 393 54.23 c.56.5.4,d.58.19.1 33844,39360 2jrnA 163 54.85 1o1xA 155 55.41 c.121.1.1 86553 2ywuA 181 56.29 2p41A 305 56.84 1dnpA 471 57.08 a.99.1.1,c.28.1.1 18775,31630 2h3hA 313 58.57 2ywjA 186 58.78 1eyrA 228 59.24 c.68.1.13 34514 1wbhA 214 61.27 c.1.10.1 120845 2z0hA 197 61.40 2f7lA 455 61.83 1wjgA 137 62.32 c.26.2.4 114696 2pfsA 150 63.19 2pbrA 195 64.57 2hqsC 118 66.58 d.79.7.1 136666 1i6wA 181 67.83 c.69.1.18 61859 1ei6A 406 68.81 c.76.1.4 90443 1geeA 261 69.84 c.2.1.2 90509 1ydnA 295 70.21 1twdA 256 70.86 c.1.30.1 107397 1kuuA 202 71.27 d.153.2.1 73019 1bn6A 294 75.38 c.69.1.8 34678 2v9dA 343 75.48 1chmA 401 77.14 c.55.2.1,d.127.1.1 33545,41142 1dhpA 292 79.87 c.1.10.1 29097 1atiA 505 80.26 c.51.1.1,d.104.1.1 33196,40745 1evlA 401 81.14 c.51.1.1,d.104.1.1 33202,40751 1nmsA 249 81.24 c.17.1.1 85879 2tpsA 227 82.63 c.1.3.1 28591 1vhoA 346 83.39 b.49.3.1,c.56.5.4 100694,100695 1qb7A 236 84.09 c.61.1.1 34087 3cdxA 354 84.15 1r1mA 164 84.58 d.79.7.1 96820 3b9pA 297 84.88 2fuvA 549 86.47 1kjnA 157 89.19 c.115.1.1 72614 1nf2A 268 89.98 c.108.1.10 91849