# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.90e-22 c.56.5.6 90921 1xovA 326 1.24e-20 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 2.409 1fnoA 417 5.320 d.58.19.1,c.56.5.4 70145,75841 1yqeA 282 7.032 c.56.7.1 123879 3pmgA 561 8.434 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2a5hA 416 8.895 3ce9A 354 10.16 2a0mA 316 12.53 c.42.1.1 125960 1o2dA 371 12.84 e.22.1.2 86591 1kfiA 572 13.17 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1edgA 380 13.28 c.1.8.3 28807 3bijA 285 14.76 1u0tA 307 14.89 e.52.1.1 107567 1vljA 407 17.95 e.22.1.2 108832 2rbkA 261 18.00 1lt8A 406 19.81 c.1.26.1 78186 1wqaA 455 21.42 1ho1A 242 22.56 c.1.24.1 61097 2pgfA 371 23.83 1tezA 474 24.16 a.99.1.1,c.28.1.1 112409,112410 1sr4B 261 25.78 d.151.1.1 105949 1tq8A 163 26.80 c.26.2.4 107204 1rpxA 230 27.25 c.1.2.2 28536 2ywxA 157 27.54 1k20A 310 28.31 c.107.1.1 68027 1jq5A 370 29.18 e.22.1.2 67084 1euaA 213 29.81 c.1.10.1 29155 2dy0A 190 30.53 1xngA 268 31.17 c.26.2.1 122186 1fs1B 141 32.71 a.157.1.1,d.42.1.1 19252,38664 2o3aA 178 34.36 1f5sA 211 35.03 c.108.1.4 59656 2nxfA 322 36.46 2e18A 257 36.51 1wbhA 214 36.96 c.1.10.1 120845 2rb7A 364 37.01 2aeeA 211 37.53 c.61.1.1 126620 1vixA 420 39.09 c.56.5.4,d.58.19.1 100777,100778 1odzA 386 40.61 c.1.8.3 86889 3cu2A 237 40.67 2anpA 291 40.80 c.56.5.4 127056 1iow 306 41.27 2qt3A 403 41.46 2dumA 170 42.39 1yw4A 341 43.49 c.56.5.7 124131 2f7lA 455 44.32 1rrmA 386 45.39 e.22.1.2 105081 2arkA 188 46.80 c.23.5.8 127202 1ig3A 263 48.53 b.82.6.1,c.100.1.1 62358,62359 2jgnA 185 49.72 1o1xA 155 50.30 c.121.1.1 86553 2q3bA 313 50.61 1dnpA 471 51.57 a.99.1.1,c.28.1.1 18775,31630 1cg2A 393 52.92 c.56.5.4,d.58.19.1 33844,39360 1oj7A 408 53.58 e.22.1.2 103971 1qb7A 236 54.66 c.61.1.1 34087 1ka9H 200 54.99 c.23.16.1 77308 3bghA 236 55.58 1gsjA 258 56.63 c.73.1.2 70397 2p41A 305 57.10 1i6wA 181 57.11 c.69.1.18 61859 2pbrA 195 57.29 1kbjA 412 57.69 c.1.4.1 72280 2hqsC 118 58.42 d.79.7.1 136666 1wjgA 137 58.65 c.26.2.4 114696 1b9dA 163 59.32 c.55.3.2 33649 1nmsA 249 61.10 c.17.1.1 85879 1ydnA 295 61.29 2ywjA 186 62.40 2z0hA 197 63.35 2pfsA 150 63.39 1ei6A 406 63.61 c.76.1.4 90443 2fiuA 99 63.77 d.58.4.16 133537 1vhoA 346 64.72 b.49.3.1,c.56.5.4 100694,100695 1vajA 214 65.21 d.309.1.1 119907 2v9dA 343 65.37 2aebA 322 70.88 c.42.1.1 126617 3cdxA 354 72.31 1rcuA 195 73.88 c.129.1.1 97295 2fuvA 549 74.51 1geeA 261 76.48 c.2.1.2 90509 1eyrA 228 77.18 c.68.1.13 34514 1bn6A 294 77.42 c.69.1.8 34678 2ywuA 181 78.40 1r1mA 164 78.88 d.79.7.1 96820 1qnf 484 79.73 1twdA 256 80.51 c.1.30.1 107397 1y13A 181 81.71 d.96.1.2 116319 1atiA 505 82.45 c.51.1.1,d.104.1.1 33196,40745 2afwA 329 83.82 c.56.5.8 126707 1zjrA 211 85.23 2q1sA 377 86.79 1qtrA 317 87.23 c.69.1.7 34660 1uaaA 673 88.06 c.37.1.19,c.37.1.19 32401,32402 1dhpA 292 88.47 c.1.10.1 29097 2tpsA 227 88.59 c.1.3.1 28591 1wpuA 147 89.28 d.275.1.1 121151 1y76A 62 89.51 a.194.1.1 122683 1usgA 346 89.66 c.93.1.1 99864