# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.49e-25 c.56.5.6 90921 1xovA 326 1.78e-23 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 1.256 2a0mA 316 5.763 c.42.1.1 125960 2a5hA 416 6.932 3ce9A 354 8.298 2pgfA 371 8.733 1yqeA 282 9.185 c.56.7.1 123879 3pmgA 561 9.760 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2nxfA 322 11.79 1lt8A 406 12.09 c.1.26.1 78186 1euaA 213 13.74 c.1.10.1 29155 2rbkA 261 14.19 1fnoA 417 14.57 d.58.19.1,c.56.5.4 70145,75841 1jq5A 370 17.87 e.22.1.2 67084 1xngA 268 18.23 c.26.2.1 122186 1ka9H 200 19.83 c.23.16.1 77308 2ywuA 181 20.68 1k20A 310 21.04 c.107.1.1 68027 1rpxA 230 21.49 c.1.2.2 28536 3bijA 285 22.59 1o2dA 371 24.89 e.22.1.2 86591 1b9dA 163 25.12 c.55.3.2 33649 1u0tA 307 25.35 e.52.1.1 107567 2o3aA 178 25.49 1wbhA 214 27.28 c.1.10.1 120845 1kfiA 572 27.73 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 3cu2A 237 27.84 2fiuA 99 28.04 d.58.4.16 133537 2tpsA 227 28.26 c.1.3.1 28591 1nmsA 249 31.73 c.17.1.1 85879 1p5dX 463 32.61 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1vljA 407 36.42 e.22.1.2 108832 1oj7A 408 36.66 e.22.1.2 103971 2p41A 305 38.67 1tezA 474 38.87 a.99.1.1,c.28.1.1 112409,112410 2aeeA 211 38.95 c.61.1.1 126620 1chmA 401 39.95 c.55.2.1,d.127.1.1 33545,41142 1fs1B 141 41.08 a.157.1.1,d.42.1.1 19252,38664 1fkx 349 41.18 2pfsA 150 42.86 1wqaA 455 43.84 1rrmA 386 44.11 e.22.1.2 105081 1tq8A 163 46.91 c.26.2.4 107204 2ywxA 157 48.41 2e18A 257 50.54 1ig3A 263 52.94 b.82.6.1,c.100.1.1 62358,62359 2q3bA 313 53.15 1vixA 420 53.17 c.56.5.4,d.58.19.1 100777,100778 2ie2A 222 53.53 1yw4A 341 54.43 c.56.5.7 124131 2pbrA 195 54.96 2fs2A 151 54.97 d.38.1.5 134003 1wehA 171 55.28 c.129.1.1 114551 2z0hA 197 55.58 1dnpA 471 55.97 a.99.1.1,c.28.1.1 18775,31630 1ho1A 242 56.77 c.1.24.1 61097 2dy0A 190 57.99 1zjrA 211 59.14 2gebA 185 59.34 1iow 306 60.14 2arkA 188 60.62 c.23.5.8 127202 2g6yA 217 61.74 1p3wA 404 62.57 c.67.1.3 87752 3cdxA 354 63.90 1bn6A 294 65.18 c.69.1.8 34678 1atiA 505 65.51 c.51.1.1,d.104.1.1 33196,40745 1vkfA 188 66.10 c.1.29.1 108656 1kjnA 157 66.17 c.115.1.1 72614 2p4mA 219 66.34 1j97A 211 66.80 c.108.1.4 62753 2ywjA 186 67.07 2dumA 170 67.93 2biiA 424 72.94 1n2eA 300 74.18 c.26.1.4 85268 1f5sA 211 75.63 c.108.1.4 59656 1edgA 380 75.94 c.1.8.3 28807 1usgA 346 76.06 c.93.1.1 99864 2qt3A 403 76.63 1vkrA 125 77.40 c.44.2.1 108689 2v9dA 343 78.58 1zsyA 357 78.98 1sr4B 261 80.28 d.151.1.1 105949 1l6rA 227 80.56 c.108.1.10 77768 1x31B 404 81.87 2f7lA 455 82.19 1qb7A 236 82.70 c.61.1.1 34087 1o1xA 155 82.74 c.121.1.1 86553 2h3hA 313 85.40 1ra0A 430 85.81 b.92.1.2,c.1.9.5 111756,111757 1y0bA 197 86.83 c.61.1.1 122476 1y76A 62 86.97 a.194.1.1 122683 1kbjA 412 89.26 c.1.4.1 72280