# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jwqA	179	6.12e-27	c.56.5.6	90921
1xovA	326	8.10e-25	b.34.11.4,c.56.5.6	122206,122207
2fb2A	340	2.180		
2a5hA	416	4.007		
1fnoA	417	8.166	d.58.19.1,c.56.5.4	70145,75841
3ce9A	354	8.647		
2pgfA	371	12.43		
1yqeA	282	14.14	c.56.7.1	123879
1fs1B	141	15.05	a.157.1.1,d.42.1.1	19252,38664
1k20A	310	16.63	c.107.1.1	68027
1u0tA	307	17.59	e.52.1.1	107567
1o2dA	371	18.06	e.22.1.2	86591
1vljA	407	20.25	e.22.1.2	108832
1x31B	404	20.25		
2a0mA	316	21.69	c.42.1.1	125960
3bijA	285	24.09		
2hqsC	118	24.66	d.79.7.1	136666
1euaA	213	24.89	c.1.10.1	29155
2qt3A	403	25.72		
1rrmA	386	25.94	e.22.1.2	105081
1yw4A	341	26.48	c.56.5.7	124131
3pmgA	561	27.34	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1vajA	214	27.67	d.309.1.1	119907
2o3aA	178	28.61		
2nxfA	322	29.74		
1jq5A	370	29.82	e.22.1.2	67084
2ywxA	157	33.62		
2fiuA	99	34.09	d.58.4.16	133537
2h3hA	313	34.17		
1rpxA	230	34.85	c.1.2.2	28536
2jmpA	107	36.96		
1nmsA	249	38.23	c.17.1.1	85879
1ig3A	263	38.26	b.82.6.1,c.100.1.1	62358,62359
2jrnA	163	39.70		
2p41A	305	39.95		
1gsjA	258	40.19	c.73.1.2	70397
1vixA	420	43.24	c.56.5.4,d.58.19.1	100777,100778
1ka9H	200	43.63	c.23.16.1	77308
3cu2A	237	44.31		
2rbkA	261	46.32		
2dumA	170	47.57		
1lt8A	406	47.65	c.1.26.1	78186
2tpsA	227	49.01	c.1.3.1	28591
2gagB	405	53.69		
1vhoA	346	55.49	b.49.3.1,c.56.5.4	100694,100695
1kfiA	572	55.95	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68555,68556,68557,68558
1fsgA	233	56.08	c.61.1.1	34029
2e18A	257	56.31		
1i6wA	181	57.01	c.69.1.18	61859
2q3bA	313	57.26		
2arkA	188	58.33	c.23.5.8	127202
1p9oA	313	59.65	c.72.3.1	94397
1oj7A	408	59.69	e.22.1.2	103971
1wbhA	214	63.61	c.1.10.1	120845
1dqsA	393	65.83	e.22.1.1	43347
2ywuA	181	66.78		
1qb7A	236	68.35	c.61.1.1	34087
2v9dA	343	70.59		
2dr1A	386	70.74		
1edgA	380	71.66	c.1.8.3	28807
1chmA	401	73.76	c.55.2.1,d.127.1.1	33545,41142
1xngA	268	74.94	c.26.2.1	122186
1pea	385	75.17		
2p4mA	219	75.49		
2g6yA	217	77.92		
1vkrA	125	78.69	c.44.2.1	108689
1y13A	181	81.11	d.96.1.2	116319
1tezA	474	86.21	a.99.1.1,c.28.1.1	112409,112410
3bhdA	234	86.57		
1qcxA	359	87.67	b.80.1.2	28028
1sr4B	261	87.77	d.151.1.1	105949
1wqaA	455	87.90		
2biiA	424	88.04		
1kuuA	202	89.78	d.153.2.1	73019