# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 9.23e-27 c.56.5.6 90921 1xovA 326 1.63e-24 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 3.727 2pgfA 371 7.132 1rpxA 230 8.557 c.1.2.2 28536 3ce9A 354 9.472 1fs1B 141 10.50 a.157.1.1,d.42.1.1 19252,38664 1fnoA 417 10.77 d.58.19.1,c.56.5.4 70145,75841 1rrmA 386 11.22 e.22.1.2 105081 2a5hA 416 12.92 2o3aA 178 12.92 2rbkA 261 13.97 3pmgA 561 14.44 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1u0tA 307 14.73 e.52.1.1 107567 2nxfA 322 14.96 3bijA 285 15.12 1euaA 213 15.29 c.1.10.1 29155 2ywuA 181 17.53 1o2dA 371 19.36 e.22.1.2 86591 1jq5A 370 20.07 e.22.1.2 67084 2qt3A 403 21.38 2a0mA 316 21.73 c.42.1.1 125960 1xngA 268 21.74 c.26.2.1 122186 2dumA 170 22.95 2fiuA 99 23.40 d.58.4.16 133537 1vljA 407 23.94 e.22.1.2 108832 1ka9H 200 25.11 c.23.16.1 77308 3cu2A 237 25.61 2jmpA 107 25.98 1sr4B 261 29.82 d.151.1.1 105949 1edgA 380 31.08 c.1.8.3 28807 1kfiA 572 32.13 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1nmsA 249 33.00 c.17.1.1 85879 2v9dA 343 33.22 1ig3A 263 34.21 b.82.6.1,c.100.1.1 62358,62359 1x31B 404 37.47 1kjnA 157 37.76 c.115.1.1 72614 2q3bA 313 38.00 1nf2A 268 41.27 c.108.1.10 91849 1tezA 474 41.71 a.99.1.1,c.28.1.1 112409,112410 3borA 237 42.01 2z0hA 197 42.03 1yw4A 341 42.45 c.56.5.7 124131 2fs2A 151 42.96 d.38.1.5 134003 1wbhA 214 45.10 c.1.10.1 120845 2jrnA 163 45.34 1ho1A 242 45.51 c.1.24.1 61097 2arkA 188 45.72 c.23.5.8 127202 1yqeA 282 46.14 c.56.7.1 123879 1wqaA 455 47.05 1iow 306 48.67 2dy0A 190 48.90 3bghA 236 52.18 1odzA 386 53.56 c.1.8.3 86889 1vixA 420 54.52 c.56.5.4,d.58.19.1 100777,100778 2ywxA 157 55.47 1lt8A 406 55.56 c.1.26.1 78186 1kbjA 412 55.94 c.1.4.1 72280 2dtrA 226 57.23 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2pbrA 195 58.00 2e18A 257 58.10 1tq8A 163 60.15 c.26.2.4 107204 1dvpA 220 60.44 a.118.9.2,g.50.1.1 19216,45358 1qb7A 236 61.08 c.61.1.1 34087 1dcqA 278 62.48 d.211.1.1,g.45.1.1 19178,45326 1n2eA 300 62.73 c.26.1.4 85268 1ta9A 450 66.95 2fliA 220 67.49 c.1.2.2 133714 1oj7A 408 67.72 e.22.1.2 103971 1atiA 505 68.33 c.51.1.1,d.104.1.1 33196,40745 1b9dA 163 70.35 c.55.3.2 33649 1i6wA 181 70.51 c.69.1.18 61859 1vajA 214 72.03 d.309.1.1 119907 1zjrA 211 72.75 1k20A 310 74.69 c.107.1.1 68027 2aeeA 211 76.22 c.61.1.1 126620 1l6rA 227 76.60 c.108.1.10 77768 2p41A 305 76.92 2pjuA 225 77.30 1gsjA 258 78.86 c.73.1.2 70397 2fp3A 316 79.65 2g6yA 217 81.56 2p4mA 219 81.74 2hqsC 118 81.87 d.79.7.1 136666 2gagB 405 83.76 1fsgA 233 84.70 c.61.1.1 34029 1f5sA 211 85.20 c.108.1.4 59656 1eyrA 228 86.05 c.68.1.13 34514 1cf4B 44 86.35 1dnpA 471 86.82 a.99.1.1,c.28.1.1 18775,31630 2tpsA 227 87.52 c.1.3.1 28591 1geeA 261 89.91 c.2.1.2 90509