# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.09e-25 c.56.5.6 90921 1xovA 326 1.50e-23 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 1.947 3pmgA 561 7.366 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 3ce9A 354 9.206 1u0tA 307 9.547 e.52.1.1 107567 2nxfA 322 10.32 1fnoA 417 11.26 d.58.19.1,c.56.5.4 70145,75841 3bijA 285 12.02 1o2dA 371 12.46 e.22.1.2 86591 1euaA 213 13.21 c.1.10.1 29155 2a0mA 316 14.12 c.42.1.1 125960 2a5hA 416 14.15 2ywuA 181 16.80 1rrmA 386 18.46 e.22.1.2 105081 1vajA 214 20.92 d.309.1.1 119907 2o3aA 178 20.98 2rbkA 261 21.41 2pgfA 371 22.06 1ka9H 200 22.23 c.23.16.1 77308 1rpxA 230 22.78 c.1.2.2 28536 1kfiA 572 23.29 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1vljA 407 23.31 e.22.1.2 108832 2qt3A 403 24.50 1ig3A 263 25.15 b.82.6.1,c.100.1.1 62358,62359 1wqaA 455 28.09 1fs1B 141 28.60 a.157.1.1,d.42.1.1 19252,38664 1lt8A 406 28.61 c.1.26.1 78186 1ho1A 242 28.68 c.1.24.1 61097 1xngA 268 31.86 c.26.2.1 122186 2fiuA 99 33.53 d.58.4.16 133537 1sr4B 261 35.21 d.151.1.1 105949 1tezA 474 35.58 a.99.1.1,c.28.1.1 112409,112410 1jq5A 370 35.97 e.22.1.2 67084 1b9dA 163 36.16 c.55.3.2 33649 2dumA 170 37.25 1wbhA 214 37.29 c.1.10.1 120845 1nmsA 249 38.20 c.17.1.1 85879 1oj7A 408 39.75 e.22.1.2 103971 2aeeA 211 40.09 c.61.1.1 126620 2e18A 257 41.59 1odzA 386 42.56 c.1.8.3 86889 2g6yA 217 43.17 2hqsC 118 43.66 d.79.7.1 136666 2z0hA 197 43.86 1qb7A 236 44.15 c.61.1.1 34087 2p4mA 219 44.84 1rcuA 195 44.88 c.129.1.1 97295 1yw4A 341 45.23 c.56.5.7 124131 2h3hA 313 46.55 2ywjA 186 46.77 1iow 306 47.83 3cu2A 237 47.84 1nf2A 268 49.37 c.108.1.10 91849 1edgA 380 50.98 c.1.8.3 28807 1kuuA 202 51.09 d.153.2.1 73019 2tpsA 227 52.56 c.1.3.1 28591 3bghA 236 52.76 1twdA 256 52.85 c.1.30.1 107397 1i6wA 181 53.42 c.69.1.18 61859 1f5sA 211 53.92 c.108.1.4 59656 1gsjA 258 54.83 c.73.1.2 70397 2q3bA 313 55.68 1x31B 404 56.49 1kjnA 157 58.50 c.115.1.1 72614 2rb7A 364 58.59 1vixA 420 58.75 c.56.5.4,d.58.19.1 100777,100778 1pea 385 59.00 1yqeA 282 60.05 c.56.7.1 123879 2arkA 188 60.21 c.23.5.8 127202 1bn6A 294 62.52 c.69.1.8 34678 1vhoA 346 63.43 b.49.3.1,c.56.5.4 100694,100695 2p41A 305 63.77 2ywxA 157 64.29 1o1xA 155 64.57 c.121.1.1 86553 1p9oA 313 65.37 c.72.3.1 94397 2jmpA 107 65.95 2fp3A 316 66.29 2dy0A 190 67.53 2ie2A 222 69.40 1dvpA 220 70.29 a.118.9.2,g.50.1.1 19216,45358 3borA 237 70.31 2jrnA 163 71.43 2oczA 231 72.14 2pbrA 195 75.04 1jjiA 311 75.64 c.69.1.2 66766 1geeA 261 77.23 c.2.1.2 90509 1kbjA 412 80.49 c.1.4.1 72280 1k20A 310 80.93 c.107.1.1 68027 1ta9A 450 81.44 2v9dA 343 81.53 1fsgA 233 83.53 c.61.1.1 34029 2r8wA 332 84.36 1h7eA 245 84.63 c.68.1.13 60717 2f7lA 455 88.01 1qtrA 317 89.32 c.69.1.7 34660 2bvyA 475 89.74 b.1.18.2,c.1.8.3 129301,129302