# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.72e-14 c.56.5.6 90921 1xovA 326 4.20e-12 b.34.11.4,c.56.5.6 122206,122207 1ta9A 450 0.8502 3ce9A 354 4.532 3bijA 285 4.557 1iow 306 6.910 1uslA 170 8.875 c.121.1.1 99871 1gdhA 320 9.155 c.2.1.4,c.23.12.1 30095,31355 2f62A 161 10.31 c.23.14.1 133021 1wqaA 455 10.37 1u3dA 509 10.45 a.99.1.1,c.28.1.1 107638,107639 2o14A 375 11.01 1qdlB 195 13.02 c.23.16.1 31437 2gcgA 330 13.09 1mx3A 347 13.82 c.2.1.4,c.23.12.1 79638,79639 1yw4A 341 14.22 c.56.5.7 124131 2hufA 393 14.52 2fhqA 141 15.16 b.45.1.1 133497 2f7lA 455 15.78 2ywjA 186 16.20 1iowA 306 16.51 c.30.1.2,d.142.1.1 31713,41481 3b6iA 198 17.52 1vffA 423 18.42 c.1.8.4 120033 2qj8A 332 18.58 1i1qB 192 18.79 c.23.16.1 61544 2j07A 420 19.05 a.99.1.1,c.28.1.1 137891,137892 2ywxA 157 19.22 2i02A 148 19.66 b.45.1.1 136936 1p9lA 245 20.45 c.2.1.3,d.81.1.3 94393,94394 1l7dA 384 20.47 c.2.1.4,c.23.12.2 77774,77775 1tkjA 284 20.62 c.56.5.4 119296 1wl8A 189 20.65 c.23.16.1 120997 2yvqA 143 22.02 1fl2A 310 22.95 c.3.1.5,c.3.1.5 59869,59870 1u11A 182 23.53 c.23.8.1 107576 2zg5A 397 23.86 2dvtA 327 24.66 c.1.9.15 131793 1xjo 284 25.50 1r3dA 264 26.29 c.69.1.35 111680 2o4cA 380 26.37 2bvyA 475 26.79 b.1.18.2,c.1.8.3 129301,129302 1c7gA 456 26.87 c.67.1.2 90415 1eyrA 228 27.22 c.68.1.13 34514 1jq5A 370 28.33 e.22.1.2 67084 2c92A 160 28.94 2c1lA 358 29.13 1dfoA 417 29.48 c.67.1.4 34480 2nt0A 497 29.60 b.71.1.2,c.1.8.3 138561,138562 2arkA 188 29.83 c.23.5.8 127202 2a5lA 200 30.66 c.23.5.8 126176 2f4nA 273 30.92 2amjA 204 31.04 1wwkA 307 31.54 2cstA 411 31.75 c.67.1.1 34273 1qp8A 303 32.27 c.2.1.4,c.23.12.1 30092,31352 1vljA 407 32.91 e.22.1.2 108832 1oboA 169 33.21 c.23.5.1 86776 1ajsA 412 33.32 c.67.1.1 34276 1vjoA 393 34.42 c.67.1.3 100827 1p5dX 463 36.88 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1l9cA 389 40.39 c.3.1.2,d.16.1.3 77815,77816 2or4A 709 40.96 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2o20A 332 41.21 2gsaA 432 41.68 c.67.1.4 34446 2hq7A 146 43.00 b.45.1.1 136657 2pjmA 226 43.10 1dhr 241 43.28 2fcjA 119 45.16 c.136.1.1 133269 3cdxA 354 45.38 1o2dA 371 45.41 e.22.1.2 86591 3bhxA 709 45.63 2c6cA 707 45.84 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2dbqA 334 46.13 1ooeA 236 47.14 c.2.1.2 87196 3cniA 156 47.55 2dtvA 397 47.61 1ka9H 200 49.71 c.23.16.1 77308 1xseA 295 50.56 c.2.1.2 115925 1xmpA 170 51.43 c.23.8.1 115521 1z15A 344 53.89 1e5dA 402 56.93 c.23.5.1,d.157.1.3 31208,42061 1l6rA 227 57.33 c.108.1.10 77768 3co8A 380 58.70 1arsA 396 58.90 c.67.1.1 34287 1lk5A 229 59.54 c.124.1.4,d.58.40.1 73960,73961 3bi1A 709 59.86 1od6A 160 60.26 c.26.1.3 86836 1lsuA 147 60.88 c.2.1.9 74250 1tezA 474 60.96 a.99.1.1,c.28.1.1 112409,112410 1xv5A 401 61.42 1o4vA 183 62.48 c.23.8.1 86628 1qq9A 284 62.88 c.56.5.4 33841 1rrmA 386 62.99 e.22.1.2 105081 2pjkA 178 63.27 1de4C 640 63.35 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1cznA 169 64.90 c.23.5.1 31181 2v9dA 343 65.03 1tuoA 464 66.38 1lssA 140 67.89 c.2.1.9 74246 1nbwB 117 68.43 c.51.3.2 80396 1ujnA 348 68.79 e.22.1.1 99460 1uj6A 227 69.36 c.124.1.4,d.58.40.1 107898,107899 1bu5A 147 69.88 c.23.5.1 31155 1kdvA 370 72.11 c.41.1.2 68486 1sg6A 393 72.35 e.22.1.1 105522 1zq9A 285 74.44 c.66.1.24 125505 1usgA 346 74.93 c.93.1.1 99864 2cukA 311 76.18 2q0lA 311 76.40 1fuiA 591 76.82 b.43.2.1,c.85.1.1 25674,35444 1dapA 320 76.96 c.2.1.3,d.81.1.3 30053,39968 2gf3A 389 78.09 c.3.1.2,d.16.1.3 135070,135071 1t0bA 252 78.71 c.23.16.6 106199 2i5gA 325 78.81 1srrA 124 78.97 c.23.1.1 31110 2bkwA 385 79.03 c.67.1.3 128714 2cjpA 328 79.76 2liv 344 80.25 2hbvA 334 82.24 c.1.9.15 136320 2q5cA 196 83.07 1rcf 169 84.74 1cozA 129 85.24 c.26.1.2 31598 1geeA 261 85.29 c.2.1.2 90509 1j9eA 147 85.61 c.23.5.1 62756 1y5eA 169 86.03 c.57.1.1 122632 2ez2A 456 86.61 1qjcA 158 86.76 c.26.1.3 63328 1ty9A 222 88.21 b.45.1.1 112827 1h7eA 245 88.30 c.68.1.13 60717 1s3iA 310 88.72 b.46.1.1,c.65.1.1 98435,98436 1eexB 224 89.21 c.51.3.1 33213 1id1A 153 89.26 c.2.1.9 62286 1uxoA 192 89.34 c.69.1.31 108121 1yqeA 282 89.51 c.56.7.1 123879