# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.69e-30 c.56.5.6 90921 1xovA 326 5.19e-26 b.34.11.4,c.56.5.6 122206,122207 1iowA 306 0.6678 c.30.1.2,d.142.1.1 31713,41481 2q7dA 346 1.042 1iow 306 1.539 3bijA 285 2.280 2ov7A 137 3.340 1sbpA 310 3.416 c.94.1.1 35760 2eklA 313 4.033 1nnfA 309 4.743 c.94.1.1 85903 1gsa 316 4.915 1xc1A 309 5.692 c.94.1.1 109543 1t3iA 420 6.399 c.67.1.3 106354 1xdwA 331 6.645 1q35A 320 6.649 c.94.1.1 95661 2z0mA 337 6.894 1xvxA 312 7.320 c.94.1.1 116097 1rrmA 386 7.378 e.22.1.2 105081 1cg2A 393 7.792 c.56.5.4,d.58.19.1 33844,39360 1jq5A 370 8.044 e.22.1.2 67084 1dxy 333 8.220 2a1rA 430 8.518 2i6jA 161 8.888 1gsaA 316 9.316 c.30.1.3,d.142.1.1 31718,41477 1ad2A 228 10.70 e.24.1.1 43353 2cukA 311 10.90 2f7lA 455 11.03 1tqjA 230 11.15 c.1.2.2 107228 2bkwA 385 11.72 c.67.1.3 128714 1vecA 206 12.86 c.37.1.19 100575 1i7nA 309 13.04 c.30.1.5,d.142.1.3 83681,83682 2pt2A 334 13.12 1atg 231 13.62 1h1yA 228 13.69 c.1.2.2 76506 2gh9A 386 13.73 1lxjA 104 13.87 d.58.48.1 84736 1atgA 231 16.36 c.94.1.1 35834 1y9uA 323 16.75 c.94.1.1 116594 1wqaA 455 17.74 2odtX 328 18.36 2iuyA 342 18.70 1u0tA 307 19.37 e.52.1.1 107567 2irpA 208 20.36 1xjcA 169 20.71 c.37.1.10 115387 3ce9A 354 20.84 1uslA 170 21.64 c.121.1.1 99871 3canA 182 22.20 1jf9A 408 23.44 c.67.1.3 62931 1y4tA 322 23.95 c.94.1.1 116464 1kjnA 157 25.60 c.115.1.1 72614 2fp3A 316 25.84 1d4oA 184 26.79 c.31.1.4 31748 1m5wA 243 26.85 c.1.24.1 84836 1tezA 474 27.45 a.99.1.1,c.28.1.1 112409,112410 2dpiA 420 27.60 d.240.1.1,e.8.1.7 131612,131613 1k0wA 231 27.68 c.74.1.1 77220 1v93A 296 27.83 c.1.23.1 100532 2d0iA 333 28.14 2ppwA 216 28.61 1owlA 484 30.46 a.99.1.1,c.28.1.1 93647,93648 2fk5A 200 30.62 1yqeA 282 31.18 c.56.7.1 123879 1vljA 407 31.22 e.22.1.2 108832 3b2yA 275 31.23 1ccwA 137 31.38 c.23.6.1 31238 2gcgA 330 33.12 2pg9A 337 33.25 1tuoA 464 33.51 1zp4A 304 33.70 2eo5A 419 33.81 1vgyA 393 34.95 c.56.5.4,d.58.19.1 100620,100621 1p5dX 463 35.58 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2yxbA 161 35.72 2g76A 335 35.81 2i87A 364 36.61 1wwkA 307 37.40 1jx4A 352 38.55 d.240.1.1,e.8.1.7 90378,90379 2q0oA 236 39.39 1qnaA 200 39.46 d.129.1.1,d.129.1.1 41226,41227 1o1xA 155 39.90 c.121.1.1 86553 2dbqA 334 41.27 3berA 249 42.68 1vhoA 346 43.57 b.49.3.1,c.56.5.4 100694,100695 1amfA 233 43.58 c.94.1.1 35833 1j4aA 333 44.81 c.2.1.4,c.23.12.1 71502,71503 2rfgA 297 45.46 1o2dA 371 45.81 e.22.1.2 86591 1eg5A 384 46.43 c.67.1.3 34429 1dnpA 471 46.54 a.99.1.1,c.28.1.1 18775,31630 1yloA 348 46.71 b.49.3.1,c.56.5.4 123659,123660 1a7j 290 46.78 1miwA 404 47.25 a.173.1.1,d.218.1.4 79162,79163 2oxcA 230 47.81 1g3qA 237 49.25 c.37.1.10 60237 1qtwA 285 50.66 c.1.15.1 29392 2nuwA 288 50.71 1qwgA 251 51.52 c.1.27.1 96473 1xkrA 206 51.66 d.252.1.1 115421 2rb7A 364 51.68 2ojpA 292 52.66 1dxyA 333 53.67 c.2.1.4,c.23.12.1 30094,31354 2f1rA 171 53.70 1ytvA 366 54.21 c.94.1.1 124016 1b9bA 255 55.12 c.1.1.1 28531 2cvjA 180 55.27 1hl2A 297 55.57 c.1.10.1 83581 2p0aA 344 55.63 2r91A 286 56.15 2pcqA 283 56.23 1ivnA 190 56.89 c.23.10.5 83719 2pi1A 334 57.47 2h5yA 254 57.85 1yqhA 109 58.73 d.58.48.1 123886 1tq8A 163 58.75 c.26.2.4 107204 1yqgA 263 58.85 2pezA 179 59.97 2g4rA 160 60.78 2hxwA 237 62.81 2jejA 358 64.30 d.240.1.1,e.8.1.7 138284,138285 1u3dA 509 64.43 a.99.1.1,c.28.1.1 107638,107639 1zbfA 142 65.20 c.55.3.1 124850 1amf 233 66.85 1t5iA 172 68.51 c.37.1.19 106450 2atsA 292 68.88 c.1.10.1 127306 2i4iA 417 69.18 1kq3A 376 69.43 e.22.1.2 68790 1eluA 390 69.54 c.67.1.3 34434 2a3nA 355 69.64 1anfA 370 70.28 c.94.1.1 35776 2ebnA 289 71.50 c.1.8.5 28990 1rd5A 262 71.80 c.1.2.4 111772 1e4eA 343 72.28 c.30.1.2,d.142.1.1 59221,59222 1df7A 159 72.47 c.71.1.1 34885 1anf 370 73.73 2j0aA 280 73.87 2onsA 314 74.40 1n08A 163 74.60 b.43.5.1 79730 1z7aA 308 74.69 c.6.2.6 124591 1l8nA 679 74.97 c.1.8.10,d.92.2.2 84564,84565 1yb1A 272 75.04 c.2.1.2 116599 2ehhA 294 75.34 2hdyA 440 75.95 3pmgA 561 76.01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2opiA 212 77.06 1pnoA 180 78.21 c.31.1.4 94953 2fiuA 99 78.54 d.58.4.16 133537 1twdA 256 78.56 c.1.30.1 107397 1ionA 243 78.76 c.37.1.10 62633 1ta9A 450 80.75 2e7uA 424 81.08 1byi 224 81.72 1w3iA 293 81.74 c.1.10.1 109152 2ph3A 245 82.36 2qcvA 332 82.57 2ew8A 249 82.81 c.2.1.2 132447 2dfzA 381 82.93 1lssA 140 83.71 c.2.1.9 74246 1pswA 348 83.85 c.87.1.7 88287 1wcwA 261 85.63 1od6A 160 88.80 c.26.1.3 86836 1t6cA 315 89.06 c.55.1.8,c.55.1.8 106558,106559 1p3wA 404 89.61 c.67.1.3 87752 1reqA 727 89.72 c.1.19.1,c.23.6.1 29620,31247