# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 9.03e-30 c.56.5.6 90921 1xovA 326 1.74e-26 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.1137 c.56.5.4,d.58.19.1 33844,39360 1iow 306 0.5929 1jq5A 370 0.8258 e.22.1.2 67084 1iowA 306 0.8619 c.30.1.2,d.142.1.1 31713,41481 3bijA 285 1.551 2q7dA 346 3.784 1vhoA 346 4.955 b.49.3.1,c.56.5.4 100694,100695 2hdyA 440 5.035 1gsa 316 5.395 1p5dX 463 6.111 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2a1rA 430 6.470 1yqeA 282 7.411 c.56.7.1 123879 1nnfA 309 7.585 c.94.1.1 85903 2iuyA 342 7.957 1y0yA 353 8.253 b.49.3.1,c.56.5.4 122514,122515 2i87A 364 8.948 2rb7A 364 9.310 1ad2A 228 9.336 e.24.1.1 43353 1d3vA 323 9.885 c.42.1.1 32559 1vgyA 393 10.05 c.56.5.4,d.58.19.1 100620,100621 2eo5A 419 10.92 2irpA 208 11.82 3pmgA 561 12.17 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1sbpA 310 12.36 c.94.1.1 35760 2ov7A 137 13.16 1v93A 296 13.99 c.1.23.1 100532 3cpxA 321 14.12 1vheA 373 14.45 b.49.3.1,c.56.5.4 100669,100670 1gsaA 316 14.98 c.30.1.3,d.142.1.1 31718,41477 3b2yA 275 14.98 1h1yA 228 15.42 c.1.2.2 76506 2a0mA 316 16.15 c.42.1.1 125960 1i7nA 309 16.92 c.30.1.5,d.142.1.3 83681,83682 3ce9A 354 18.55 1kq3A 376 18.89 e.22.1.2 68790 1nofA 383 20.10 b.71.1.2,c.1.8.3 92020,92021 1u0tA 307 20.60 e.52.1.1 107567 1sffA 426 20.86 c.67.1.4 105482 3canA 182 21.02 2cvjA 180 21.58 1rrmA 386 21.89 e.22.1.2 105081 1tqjA 230 23.04 c.1.2.2 107228 1uslA 170 23.09 c.121.1.1 99871 2fk5A 200 23.16 1dnpA 471 23.80 a.99.1.1,c.28.1.1 18775,31630 2aebA 322 24.25 c.42.1.1 126617 2i6jA 161 24.35 1zp4A 304 25.59 1yloA 348 25.90 b.49.3.1,c.56.5.4 123659,123660 1hkhA 279 26.01 c.69.1.12 90628 2zadA 345 26.69 2f7lA 455 27.05 2q0oA 236 27.07 1xvxA 312 27.17 c.94.1.1 116097 2gh9A 386 27.19 1eluA 390 27.41 c.67.1.3 34434 2gu2A 312 28.03 2g76A 335 28.40 1e4eA 343 30.31 c.30.1.2,d.142.1.1 59221,59222 2q43A 418 30.51 c.56.5.4,d.58.19.1 139821,139822 2pe3A 354 30.77 2z06A 252 30.93 2odtX 328 30.94 1ceo 343 31.01 2qvbA 297 31.28 1xdwA 331 32.45 1xc1A 309 33.94 c.94.1.1 109543 1wwkA 307 34.11 2a1fA 247 34.12 c.73.1.3 125991 2bkwA 385 34.17 c.67.1.3 128714 1eg5A 384 36.23 c.67.1.3 34429 1h3fA 432 36.26 c.26.1.1,d.66.1.4 76631,76632 2gzsA 278 36.52 2j0aA 280 36.78 1q35A 320 37.35 c.94.1.1 95661 1y9uA 323 37.36 c.94.1.1 116594 2bcoA 350 37.64 c.56.5.7 128302 2bs9A 503 38.05 b.71.1.2,c.1.8.3 129062,129063 1m5wA 243 38.79 c.1.24.1 84836 1jx4A 352 39.44 d.240.1.1,e.8.1.7 90378,90379 1wohA 305 39.56 c.42.1.1 109446 1r1mA 164 40.43 d.79.7.1 96820 2dgkA 452 40.44 1od6A 160 40.77 c.26.1.3 86836 2nuwA 288 41.00 1tfuA 157 42.69 c.26.1.3 106859 1vljA 407 43.04 e.22.1.2 108832 2r91A 286 43.05 2rdxA 379 43.58 2a67A 167 43.61 1tuoA 464 44.54 4eugA 229 45.15 c.18.1.1 31019 1dxy 333 46.24 1w3iA 293 47.55 c.1.10.1 109152 2o14A 375 48.32 1o1xA 155 48.40 c.121.1.1 86553 1ivnA 190 49.36 c.23.10.5 83719 2bneA 241 49.94 c.73.1.3 128824 1o2dA 371 51.11 e.22.1.2 86591 1i60A 278 51.35 c.1.15.4 71118 2e7uA 424 52.07 2f6uA 234 52.74 c.1.4.1 133061 2p0aA 344 53.09 1w24A 182 54.65 d.159.1.7 120579 1d4oA 184 55.23 c.31.1.4 31748 1lxjA 104 55.40 d.58.48.1 84736 1rd5A 262 56.71 c.1.2.4 111772 1atg 231 56.91 2pi1A 334 56.97 1qtwA 285 57.01 c.1.15.1 29392 2h0aA 276 57.52 2va1A 256 57.91 3b6iA 198 58.18 2cukA 311 58.35 1vecA 206 58.58 c.37.1.19 100575 1tezA 474 59.98 a.99.1.1,c.28.1.1 112409,112410 2g4rA 160 60.06 2jejA 358 60.46 d.240.1.1,e.8.1.7 138284,138285 2a5lA 200 61.01 c.23.5.8 126176 2pcqA 283 61.58 2fp3A 316 62.16 1t3iA 420 63.70 c.67.1.3 106354 2o0rA 411 64.28 1jmvA 141 64.98 c.26.2.4 66897 1brtA 277 65.98 c.69.1.12 34699 1vkfA 188 66.43 c.1.29.1 108656 1xkyA 301 66.47 c.1.10.1 122094 2gruA 368 67.65 1zbfA 142 67.67 c.55.3.1 124850 1ukz 203 68.25 2id1A 130 68.29 2pezA 179 68.57 1k0wA 231 68.81 c.74.1.1 77220 1qz9A 416 68.86 c.67.1.3 96621 3cgxA 242 70.28 1ytvA 366 70.97 c.94.1.1 124016 2fyfA 398 71.56 2opiA 212 71.95 1oc7A 364 72.07 c.6.1.1 86794 1reqA 727 72.43 c.1.19.1,c.23.6.1 29620,31247 2fvgA 340 72.59 b.49.3.1,c.56.5.4 134201,134202 1a7j 290 73.88 1pnoA 180 74.28 c.31.1.4 94953 2atsA 292 74.74 c.1.10.1 127306 1ybdA 239 75.77 c.73.1.3 122884 1muwA 386 75.97 c.1.15.3 79495 1vi6A 208 76.40 c.23.15.1 100736 2iw1A 374 77.92 c.87.1.8 137738 2onsA 314 78.84 1j4aA 333 79.20 c.2.1.4,c.23.12.1 71502,71503 1tq8A 163 79.54 c.26.2.4 107204 1yb0A 159 80.13 d.118.1.1 122865 1lq9A 112 80.62 d.58.4.3 78129 2pblA 262 84.21 3c9fA 557 84.34 1rtqA 299 86.43 c.56.5.4 97819 1ujnA 348 87.36 e.22.1.1 99460 1ii7A 333 87.57 d.159.1.4 62415 1brt 277 88.63 1y60A 169 89.08 d.14.1.12 116489 1s6yA 450 89.18 c.2.1.5,d.162.1.2 105314,105315 3bv0A 437 89.69