# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.62e-30 c.56.5.6 90921 1xovA 326 1.23e-26 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.1247 c.56.5.4,d.58.19.1 33844,39360 1iow 306 0.6341 1jq5A 370 0.9313 e.22.1.2 67084 1iowA 306 1.021 c.30.1.2,d.142.1.1 31713,41481 3bijA 285 1.763 2q7dA 346 4.294 2hdyA 440 4.368 1vhoA 346 4.943 b.49.3.1,c.56.5.4 100694,100695 2a1rA 430 5.645 2irpA 208 5.688 1gsa 316 6.096 1ad2A 228 6.807 e.24.1.1 43353 1p5dX 463 6.922 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1nnfA 309 7.448 c.94.1.1 85903 1d3vA 323 8.719 c.42.1.1 32559 2ov7A 137 9.294 1y0yA 353 9.372 b.49.3.1,c.56.5.4 122514,122515 3b2yA 275 9.425 1sbpA 310 9.482 c.94.1.1 35760 2eo5A 419 9.867 2i87A 364 10.05 1v93A 296 11.04 c.1.23.1 100532 1vgyA 393 11.12 c.56.5.4,d.58.19.1 100620,100621 3ce9A 354 11.38 1yqeA 282 11.63 c.56.7.1 123879 2rb7A 364 11.81 1gsaA 316 13.15 c.30.1.3,d.142.1.1 31718,41477 3pmgA 561 13.35 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2iuyA 342 13.76 1sffA 426 14.30 c.67.1.4 105482 2fk5A 200 14.52 1vheA 373 14.58 b.49.3.1,c.56.5.4 100669,100670 3cpxA 321 15.67 1rrmA 386 17.82 e.22.1.2 105081 1i7nA 309 17.99 c.30.1.5,d.142.1.3 83681,83682 2gh9A 386 18.14 1kq3A 376 18.76 e.22.1.2 68790 1h1yA 228 19.91 c.1.2.2 76506 1uslA 170 20.59 c.121.1.1 99871 2a0mA 316 20.65 c.42.1.1 125960 2aebA 322 23.05 c.42.1.1 126617 1dnpA 471 23.19 a.99.1.1,c.28.1.1 18775,31630 1xvxA 312 23.42 c.94.1.1 116097 2zadA 345 23.43 1jx4A 352 23.84 d.240.1.1,e.8.1.7 90378,90379 1tqjA 230 23.90 c.1.2.2 107228 1nofA 383 23.91 b.71.1.2,c.1.8.3 92020,92021 2cvjA 180 24.77 3canA 182 25.12 1u0tA 307 25.46 e.52.1.1 107567 2f7lA 455 26.37 1xc1A 309 27.14 c.94.1.1 109543 1q35A 320 27.24 c.94.1.1 95661 1zp4A 304 27.53 2q0oA 236 28.49 2qvbA 297 28.73 1xdwA 331 29.05 1eluA 390 29.29 c.67.1.3 34434 2bs9A 503 29.40 b.71.1.2,c.1.8.3 129062,129063 1m5wA 243 29.72 c.1.24.1 84836 1h3fA 432 31.70 c.26.1.1,d.66.1.4 76631,76632 2bkwA 385 32.08 c.67.1.3 128714 1hkhA 279 32.28 c.69.1.12 90628 1eg5A 384 32.35 c.67.1.3 34429 2opiA 212 32.48 1r1mA 164 33.27 d.79.7.1 96820 2r91A 286 33.53 1k0wA 231 33.54 c.74.1.1 77220 2odtX 328 34.25 2f6uA 234 34.92 c.1.4.1 133061 2pe3A 354 35.26 1ceo 343 35.64 2nuwA 288 35.83 2q43A 418 35.98 c.56.5.4,d.58.19.1 139821,139822 1yloA 348 36.02 b.49.3.1,c.56.5.4 123659,123660 1od6A 160 36.54 c.26.1.3 86836 2dgkA 452 36.86 2i6jA 161 36.96 2p0aA 344 37.29 2j0aA 280 37.33 1tuoA 464 37.92 2a1fA 247 38.07 c.73.1.3 125991 2g76A 335 38.80 1vljA 407 39.21 e.22.1.2 108832 1e4eA 343 39.93 c.30.1.2,d.142.1.1 59221,59222 1y9uA 323 40.38 c.94.1.1 116594 1w3iA 293 40.82 c.1.10.1 109152 2pcqA 283 41.14 2e7uA 424 41.29 1wwkA 307 41.56 1tfuA 157 42.02 c.26.1.3 106859 2z06A 252 42.73 1dxy 333 42.98 2o14A 375 43.05 2gzsA 278 43.65 1o1xA 155 44.87 c.121.1.1 86553 1wohA 305 44.93 c.42.1.1 109446 1qz9A 416 45.21 c.67.1.3 96621 2pi1A 334 46.24 2rdxA 379 46.68 2gu2A 312 46.80 2a67A 167 47.42 1ivnA 190 47.52 c.23.10.5 83719 2jejA 358 48.81 d.240.1.1,e.8.1.7 138284,138285 1o2dA 371 49.14 e.22.1.2 86591 1vecA 206 49.33 c.37.1.19 100575 3b6iA 198 52.38 2cukA 311 55.56 1lxjA 104 55.75 d.58.48.1 84736 1tezA 474 56.16 a.99.1.1,c.28.1.1 112409,112410 1atg 231 56.38 2fqxA 318 56.43 1i60A 278 57.10 c.1.15.4 71118 4eugA 229 57.16 c.18.1.1 31019 1d4oA 184 57.66 c.31.1.4 31748 2a5lA 200 58.09 c.23.5.8 126176 1z5hA 780 59.38 2bneA 241 60.33 c.73.1.3 128824 2h0aA 276 61.95 1vi6A 208 64.24 c.23.15.1 100736 1xkyA 301 64.82 c.1.10.1 122094 2bcoA 350 64.92 c.56.5.7 128302 1jmvA 141 64.93 c.26.2.4 66897 3cgxA 242 65.26 2atsA 292 65.65 c.1.10.1 127306 1t3iA 420 66.00 c.67.1.3 106354 1zbfA 142 66.41 c.55.3.1 124850 1w24A 182 66.62 d.159.1.7 120579 2fyfA 398 67.44 1ytvA 366 70.55 c.94.1.1 124016 1ybdA 239 70.96 c.73.1.3 122884 2pezA 179 71.65 1vkfA 188 72.26 c.1.29.1 108656 2z00A 426 72.92 1rd5A 262 73.70 c.1.2.4 111772 1reqA 727 73.87 c.1.19.1,c.23.6.1 29620,31247 1brtA 277 75.06 c.69.1.12 34699 1ukz 203 75.23 1g3qA 237 75.39 c.37.1.10 60237 1qtwA 285 75.50 c.1.15.1 29392 2va1A 256 76.12 2gruA 368 76.43 2o0rA 411 78.97 1pswA 348 79.98 c.87.1.7 88287 2id1A 130 80.90 1lq9A 112 83.19 d.58.4.3 78129 2dpiA 420 83.65 d.240.1.1,e.8.1.7 131612,131613 1j4aA 333 84.20 c.2.1.4,c.23.12.1 71502,71503 1ii7A 333 84.23 d.159.1.4 62415 2bkkA 264 84.93 1tq8A 163 85.48 c.26.2.4 107204 1muwA 386 85.48 c.1.15.3 79495 1anfA 370 86.09 c.94.1.1 35776 2ghaA 382 86.24 3bv0A 437 86.53 2onsA 314 86.89 1xfkA 336 87.10 c.42.1.1 115264 2g4rA 160 88.52 2qmoA 220 89.07 2gcgA 330 89.36 2ojpA 292 89.63