# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.90e-23 c.56.5.6 90921 1xovA 326 1.07e-20 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.9849 2g76A 335 1.038 2eklA 313 1.501 1iowA 306 1.653 c.30.1.2,d.142.1.1 31713,41481 1iow 306 1.789 1cg2A 393 1.818 c.56.5.4,d.58.19.1 33844,39360 1ycdA 243 3.927 1d3vA 323 4.153 c.42.1.1 32559 2rb7A 364 4.205 1o2dA 371 4.310 e.22.1.2 86591 1wwkA 307 4.686 1dxy 333 4.730 2cukA 311 5.305 1rrmA 386 6.415 e.22.1.2 105081 1xdwA 331 7.452 1kjnA 157 7.744 c.115.1.1 72614 2dbqA 334 8.891 3ce9A 354 9.300 2i6jA 161 9.307 2gcgA 330 9.546 3cpxA 321 9.755 1sbpA 310 10.03 c.94.1.1 35760 1gsa 316 10.30 2z0mA 337 10.40 2zadA 345 10.56 1vljA 407 11.79 e.22.1.2 108832 1sffA 426 11.84 c.67.1.4 105482 2i4iA 417 13.27 1uslA 170 13.83 c.121.1.1 99871 1j4aA 333 14.62 c.2.1.4,c.23.12.1 71502,71503 1dxyA 333 14.63 c.2.1.4,c.23.12.1 30094,31354 2pi1A 334 14.65 1atg 231 15.11 2q7dA 346 16.42 2d0iA 333 16.54 2eo5A 419 16.56 1xvxA 312 17.16 c.94.1.1 116097 1ta9A 450 17.40 2ef5A 290 17.95 1gsaA 316 17.99 c.30.1.3,d.142.1.1 31718,41477 1s6yA 450 19.42 c.2.1.5,d.162.1.2 105314,105315 1vhoA 346 19.83 b.49.3.1,c.56.5.4 100694,100695 1vecA 206 20.15 c.37.1.19 100575 1ccwA 137 20.53 c.23.6.1 31238 2pezA 179 21.87 1yloA 348 21.91 b.49.3.1,c.56.5.4 123659,123660 2aioA 269 22.30 d.157.1.1 126829 1vgyA 393 22.95 c.56.5.4,d.58.19.1 100620,100621 1gdhA 320 23.22 c.2.1.4,c.23.12.1 30095,31355 2yxbA 161 23.59 2bcoA 350 23.96 c.56.5.7 128302 1atgA 231 24.84 c.94.1.1 35834 2bkwA 385 25.41 c.67.1.3 128714 2i87A 364 27.09 1v93A 296 28.55 c.1.23.1 100532 2aebA 322 29.16 c.42.1.1 126617 2onsA 314 29.93 1u0tA 307 30.45 e.52.1.1 107567 2qvbA 297 31.47 1wcwA 261 31.63 1gtkA 313 32.67 c.94.1.1,d.50.2.1 76346,76347 1xc1A 309 33.01 c.94.1.1 109543 3berA 249 33.13 2oztA 332 35.42 2qs9A 194 35.56 1s8nA 205 35.63 c.23.1.1 105374 2ax4A 198 36.14 2gmnA 274 37.87 1xklA 273 38.32 c.69.1.20 115410 1y37A 304 38.43 1qczA 169 39.02 c.23.8.1 31276 1pnoA 180 39.06 c.31.1.4 94953 1kq3A 376 39.22 e.22.1.2 68790 1o1xA 155 40.05 c.121.1.1 86553 2gcuA 245 40.65 1d4oA 184 41.65 c.31.1.4 31748 2fqxA 318 42.45 1nnfA 309 43.64 c.94.1.1 85903 2h0aA 276 44.51 1bn7A 294 44.51 c.69.1.8 34677 1jq5A 370 44.51 e.22.1.2 67084 1rh9A 373 45.50 c.1.8.3 118773 1xjcA 169 46.16 c.37.1.10 115387 1xmpA 170 46.17 c.23.8.1 115521 1ceo 343 46.69 2dpiA 420 47.19 d.240.1.1,e.8.1.7 131612,131613 2h5yA 254 48.44 1r1dA 247 48.70 c.69.1.29 96813 3b2yA 275 48.82 1i1qB 192 49.43 c.23.16.1 61544 2psdA 318 50.90 1vheA 373 51.61 b.49.3.1,c.56.5.4 100669,100670 2o2iA 300 52.50 2pe3A 354 53.20 1qq9A 284 53.32 c.56.5.4 33841 1tkjA 284 54.10 c.56.5.4 119296 3bzwA 274 55.32 1c4xA 285 55.79 c.69.1.10 34684 2o4cA 380 56.26 1mj5A 302 56.42 c.69.1.8 91285 1rtqA 299 56.77 c.56.5.4 97819 1uc8A 280 58.13 c.30.1.6,d.142.1.7 99165,99166 2q0oA 236 58.58 2rfgA 297 62.77 1e4eA 343 62.94 c.30.1.2,d.142.1.1 59221,59222 1ad2A 228 64.01 e.24.1.1 43353 2hqsC 118 65.61 d.79.7.1 136666 3bghA 236 65.84 1r88A 280 65.88 c.69.1.3 97219 1brt 277 66.10 2qryA 330 66.34 2oxcA 230 68.63 2ooxA 137 70.09 2fssA 365 70.20 2ocgA 254 70.30 2ffeA 311 70.45 c.143.1.1 133381 2j6iA 364 70.55 1lxjA 104 70.63 d.58.48.1 84736 1uxoA 192 71.86 c.69.1.31 108121 2fvgA 340 72.30 b.49.3.1,c.56.5.4 134201,134202 1f4pA 147 72.49 c.23.5.1 59651 1ei9A 279 72.56 c.69.1.13 34713 1oaa 259 72.71 1mdlA 359 74.74 c.1.11.2,d.54.1.1 29247,38891 2i7vA 459 74.79 1amfA 233 75.34 c.94.1.1 35833 1oapA 109 76.32 d.79.7.1 92706 1aisA 182 76.38 d.129.1.1,d.129.1.1 41288,41289 3bf7A 255 78.35 1v9cA 218 78.82 c.23.17.1 100533 2a5lA 200 79.20 c.23.5.8 126176 1hkhA 279 79.29 c.69.1.12 90628 1y0yA 353 79.92 b.49.3.1,c.56.5.4 122514,122515 1dysA 348 80.25 c.6.1.1 30669 2gh9A 386 81.02 1np6A 174 81.39 c.37.1.10 85954 2qruA 274 82.13 2gasA 307 82.26 1x8hA 228 85.82 d.157.1.1 114961 1qj4A 257 86.10 c.69.1.20 34796 1hl2A 297 86.38 c.1.10.1 83581 1u7pA 164 87.16 c.108.1.17 113095 1h1yA 228 87.35 c.1.2.2 76506 2ph3A 245 87.60 2e3jA 356 87.69 1tuoA 464 89.45 1yqhA 109 89.46 d.58.48.1 123886 1xkrA 206 89.57 d.252.1.1 115421 2yvuA 186 89.61