# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 5.11e-30 c.56.5.6 90921 1xovA 326 5.49e-26 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.4235 c.56.5.4,d.58.19.1 33844,39360 2q7dA 346 0.9420 3bijA 285 1.053 1jq5A 370 1.305 e.22.1.2 67084 1gsa 316 1.791 1iowA 306 2.893 c.30.1.2,d.142.1.1 31713,41481 1iow 306 3.658 2i6jA 161 4.675 1p5dX 463 5.146 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1i7nA 309 6.383 c.30.1.5,d.142.1.3 83681,83682 2odtX 328 7.158 1d3vA 323 7.929 c.42.1.1 32559 1ad2A 228 9.128 e.24.1.1 43353 2irpA 208 9.396 1kq3A 376 9.842 e.22.1.2 68790 1gsaA 316 10.02 c.30.1.3,d.142.1.1 31718,41477 2q0oA 236 11.59 2iuyA 342 12.43 2aebA 322 13.27 c.42.1.1 126617 2f7lA 455 14.76 2gh9A 386 14.90 2a1rA 430 15.56 1jx4A 352 15.68 d.240.1.1,e.8.1.7 90378,90379 2i87A 364 17.92 1u0tA 307 17.94 e.52.1.1 107567 2pcqA 283 18.02 1xdwA 331 18.22 3b2yA 275 18.28 2a0mA 316 19.12 c.42.1.1 125960 1wqaA 455 19.83 2opiA 212 19.99 1sbpA 310 20.20 c.94.1.1 35760 2nuwA 288 20.50 2jejA 358 20.86 d.240.1.1,e.8.1.7 138284,138285 1k0wA 231 21.37 c.74.1.1 77220 2eo5A 419 21.65 1snyA 267 21.77 c.2.1.2 105833 1uslA 170 23.73 c.121.1.1 99871 2ov7A 137 24.66 1sffA 426 24.67 c.67.1.4 105482 1wwkA 307 25.66 2zadA 345 25.67 1yqeA 282 25.86 c.56.7.1 123879 2r91A 286 26.16 2bs9A 503 26.44 b.71.1.2,c.1.8.3 129062,129063 1hkhA 279 27.13 c.69.1.12 90628 1xvxA 312 27.71 c.94.1.1 116097 3ce9A 354 27.97 1v93A 296 28.00 c.1.23.1 100532 1dxy 333 28.89 2hdyA 440 29.23 3pmgA 561 29.42 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2h0aA 276 29.58 2g76A 335 29.71 2fk5A 200 30.36 1nofA 383 30.57 b.71.1.2,c.1.8.3 92020,92021 2cukA 311 30.67 1g3qA 237 31.67 c.37.1.10 60237 1rrmA 386 31.87 e.22.1.2 105081 2rfgA 297 32.39 1tfuA 157 32.54 c.26.1.3 106859 1od6A 160 32.64 c.26.1.3 86836 1lxjA 104 32.85 d.58.48.1 84736 2rb7A 364 33.82 2fp3A 316 34.82 1vgyA 393 35.68 c.56.5.4,d.58.19.1 100620,100621 1jmvA 141 35.74 c.26.2.4 66897 1w3iA 293 36.18 c.1.10.1 109152 1y0yA 353 36.60 b.49.3.1,c.56.5.4 122514,122515 1vhoA 346 36.83 b.49.3.1,c.56.5.4 100694,100695 1nnfA 309 37.01 c.94.1.1 85903 1atg 231 37.80 1zp4A 304 38.23 2ehhA 294 38.39 1wjgA 137 38.78 c.26.2.4 114696 2qvbA 297 39.18 1muwA 386 39.44 c.1.15.3 79495 1o2dA 371 39.97 e.22.1.2 86591 2cvjA 180 40.29 2dbqA 334 40.44 1j4aA 333 41.65 c.2.1.4,c.23.12.1 71502,71503 1wohA 305 41.83 c.42.1.1 109446 3cpxA 321 42.09 1xc1A 309 43.62 c.94.1.1 109543 2e7uA 424 43.74 1tqjA 230 44.04 c.1.2.2 107228 2z00A 426 44.04 1w24A 182 44.85 d.159.1.7 120579 1hl2A 297 45.39 c.1.10.1 83581 1xkyA 301 47.06 c.1.10.1 122094 2pi1A 334 48.69 1tuoA 464 49.36 1bx4A 345 49.90 c.72.1.1 34935 1tq8A 163 50.09 c.26.2.4 107204 2j0aA 280 51.14 1anfA 370 51.40 c.94.1.1 35776 1y9uA 323 51.94 c.94.1.1 116594 1q35A 320 52.53 c.94.1.1 95661 1d4oA 184 53.65 c.31.1.4 31748 1vljA 407 57.27 e.22.1.2 108832 2pezA 179 57.91 2g4rA 160 58.11 2pfsA 150 58.45 2p0aA 344 58.60 1anf 370 58.62 1ceo 343 58.69 1mrzA 293 59.85 b.43.5.1,c.26.1.3 91452,91453 1y37A 304 60.35 2onsA 314 61.43 1reqA 727 62.92 c.1.19.1,c.23.6.1 29620,31247 1eluA 390 62.94 c.67.1.3 34434 2bkwA 385 63.08 c.67.1.3 128714 1pswA 348 63.28 c.87.1.7 88287 1vflA 356 64.79 c.1.9.1 120041 2z0mA 337 66.60 1ccwA 137 67.97 c.23.6.1 31238 2dpiA 420 68.10 d.240.1.1,e.8.1.7 131612,131613 1jl2A 156 68.14 c.55.3.1 66822 1yb0A 159 69.18 d.118.1.1 122865 1ytvA 366 70.41 c.94.1.1 124016 1kjnA 157 70.49 c.115.1.1 72614 1h1yA 228 70.58 c.1.2.2 76506 1vheA 373 70.64 b.49.3.1,c.56.5.4 100669,100670 1qtwA 285 70.81 c.1.15.1 29392 2e9yA 316 71.33 3c9hA 355 73.68 2o14A 375 76.42 1gdhA 320 78.31 c.2.1.4,c.23.12.1 30095,31355 1yloA 348 79.36 b.49.3.1,c.56.5.4 123659,123660 2gcuA 245 80.44 2gcgA 330 80.65 2fqxA 318 81.97 2ppwA 216 82.42 1gq6A 313 83.03 c.42.1.1 70341 3ca8A 266 83.12 2vlbA 251 83.99 2o3aA 178 84.06 1qnaA 200 84.80 d.129.1.1,d.129.1.1 41226,41227 1h3fA 432 85.02 c.26.1.1,d.66.1.4 76631,76632 1xjcA 169 85.25 c.37.1.10 115387 1r1mA 164 85.56 d.79.7.1 96820 1pvtA 238 85.98 c.74.1.1 95189 1atgA 231 86.06 c.94.1.1 35834 1whsB 153 87.11 1wcv1 257 87.34 1yqhA 109 88.32 d.58.48.1 123886 1i60A 278 88.94 c.1.15.4 71118