# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.30e-23 c.56.5.6 90921 1xovA 326 2.34e-20 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.1942 2z00A 426 1.707 2q7dA 346 2.646 2iuyA 342 3.039 2odtX 328 3.689 1gsa 316 4.122 1iow 306 5.121 1jx4A 352 5.298 d.240.1.1,e.8.1.7 90378,90379 1cg2A 393 5.387 c.56.5.4,d.58.19.1 33844,39360 3cpxA 321 6.266 2bs9A 503 8.413 b.71.1.2,c.1.8.3 129062,129063 1cs0A 1073 8.502 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1k0wA 231 9.622 c.74.1.1 77220 1qw9A 502 11.37 b.71.1.2,c.1.8.3 96466,96467 1p1mA 406 11.67 b.92.1.4,c.1.9.9 87696,87697 2bkwA 385 11.96 c.67.1.3 128714 1fobA 334 12.36 c.1.8.3 83255 3bh1A 507 12.37 1ta9A 450 14.83 1sw2A 275 14.99 c.94.1.1 106064 2fp3A 316 15.15 1wohA 305 15.42 c.42.1.1 109446 1muwA 386 15.54 c.1.15.3 79495 2fk5A 200 15.93 1iowA 306 16.07 c.30.1.2,d.142.1.1 31713,41481 2pgeA 377 16.83 2gu2A 312 17.71 2fp4B 395 18.06 c.23.4.1,d.142.1.4 133897,133898 2pcqA 283 19.71 1eg5A 384 20.60 c.67.1.3 34429 2i9iA 254 20.87 3pmgA 561 21.34 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2f6uA 234 22.12 c.1.4.1 133061 2fyfA 398 22.82 1d3vA 323 22.88 c.42.1.1 32559 1y0yA 353 22.94 b.49.3.1,c.56.5.4 122514,122515 2i6jA 161 23.82 4ubpC 570 24.60 b.92.1.1,c.1.9.2 28431,29053 2i87A 364 26.56 3c9fA 557 26.77 1kdgA 546 27.49 c.3.1.2,d.16.1.1 77337,77338 2aebA 322 27.54 c.42.1.1 126617 1o12A 376 31.11 b.92.1.5,c.1.9.10 80758,80759 1xc1A 309 31.42 c.94.1.1 109543 2h0aA 276 31.49 1yloA 348 32.39 b.49.3.1,c.56.5.4 123659,123660 2absA 383 32.79 c.72.1.1 126534 1gsaA 316 33.73 c.30.1.3,d.142.1.1 31718,41477 1auk 489 36.09 1jq5A 370 36.71 e.22.1.2 67084 2eb0A 307 37.74 2i5gA 325 37.91 2vlbA 251 38.59 2dr3A 247 40.12 1qwgA 251 40.35 c.1.27.1 96473 2qvbA 297 41.20 1tuoA 464 41.57 3ce9A 354 41.88 1snyA 267 42.41 c.2.1.2 105833 1kq3A 376 44.69 e.22.1.2 68790 1kwmA 402 44.99 c.56.5.1,d.58.3.1 73079,73080 1x7yA 400 46.13 c.36.1.11 114944 1qnrA 344 46.95 c.1.8.3 28834 1nofA 383 48.50 b.71.1.2,c.1.8.3 92020,92021 2ow6A 1045 49.36 1v93A 296 50.17 c.1.23.1 100532 2z7bA 270 50.58 1f07A 321 51.56 c.1.16.3 59560 2puzA 419 51.57 2gcuA 245 53.23 1lucB 324 53.29 c.1.16.1 29548 1g38A 393 53.60 c.66.1.27,d.287.1.1 111567,111568 1a99A 344 54.46 c.94.1.1 35812 1yp2A 451 55.08 b.81.1.4,c.68.1.6 123798,123799 2ef5A 290 55.11 2gh9A 386 55.32 2olnA 397 55.98 1rqbA 539 56.01 a.5.7.2,c.1.10.5 105057,105058 2irpA 208 56.20 1gq6A 313 57.32 c.42.1.1 70341 2f7lA 455 58.29 2g76A 335 58.38 2jfnA 285 63.19 2yxtA 312 65.79 2e3jA 356 66.30 1i7nA 309 68.19 c.30.1.5,d.142.1.3 83681,83682 1byi 224 68.67 1hkhA 279 70.69 c.69.1.12 90628 2gagA 965 70.71 1g3qA 237 70.81 c.37.1.10 60237 2v26A 784 71.26 2bcoA 350 71.58 c.56.5.7 128302 1p5dX 463 71.89 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1nrwA 288 72.17 c.108.1.10 86128 3cniA 156 72.38 1vhoA 346 73.93 b.49.3.1,c.56.5.4 100694,100695 1geqA 248 75.18 c.1.2.4 28589 1qtwA 285 75.59 c.1.15.1 29392 1fc4A 401 75.84 c.67.1.4 59760 1i0dA 332 76.18 c.1.9.3 61487 1ni4A 365 76.56 c.36.1.11 85728 1h1yA 228 76.77 c.1.2.2 76506 1u0tA 307 76.92 e.52.1.1 107567 2dr1A 386 77.77 2pi1A 334 78.65 2gphA 364 78.82 2aq4A 434 79.61 1od6A 160 80.73 c.26.1.3 86836 1uslA 170 81.59 c.121.1.1 99871 1anfA 370 86.47 c.94.1.1 35776 1lsuA 147 86.54 c.2.1.9 74250 2vbfA 570 87.47 3ca8A 266 87.82 2d0iA 333 89.99