# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 4.79e-28 c.56.5.6 90921 1xovA 326 1.56e-24 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 1.405 c.56.5.4,d.58.19.1 33844,39360 1iow 306 1.681 3bijA 285 1.764 2q7dA 346 1.778 2a1rA 430 2.009 1jq5A 370 2.223 e.22.1.2 67084 1iowA 306 3.471 c.30.1.2,d.142.1.1 31713,41481 2odtX 328 4.412 3ce9A 354 5.001 1sbpA 310 5.584 c.94.1.1 35760 1gsa 316 5.894 2i6jA 161 6.381 1kq3A 376 8.456 e.22.1.2 68790 1jx4A 352 8.574 d.240.1.1,e.8.1.7 90378,90379 2irpA 208 9.384 2jejA 358 12.68 d.240.1.1,e.8.1.7 138284,138285 2i87A 364 12.84 1k0wA 231 13.46 c.74.1.1 77220 1tfuA 157 13.57 c.26.1.3 106859 1xvxA 312 15.08 c.94.1.1 116097 1o2dA 371 15.40 e.22.1.2 86591 2pcqA 283 15.80 3b2yA 275 16.23 1rrmA 386 16.32 e.22.1.2 105081 1i7nA 309 16.34 c.30.1.5,d.142.1.3 83681,83682 2hdyA 440 16.75 2ov7A 137 17.10 1nofA 383 17.19 b.71.1.2,c.1.8.3 92020,92021 1vhoA 346 18.03 b.49.3.1,c.56.5.4 100694,100695 1od6A 160 19.81 c.26.1.3 86836 2fk5A 200 19.98 1gsaA 316 22.09 c.30.1.3,d.142.1.1 31718,41477 1sffA 426 22.57 c.67.1.4 105482 2nuwA 288 22.65 1y0yA 353 22.83 b.49.3.1,c.56.5.4 122514,122515 2e7uA 424 23.21 1xc1A 309 23.89 c.94.1.1 109543 2f4qA 346 24.93 1ad2A 228 24.99 e.24.1.1 43353 2eklA 313 26.91 1p5dX 463 28.87 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2fp3A 316 29.13 2gh9A 386 29.16 3cgxA 242 29.30 1df7A 159 29.41 c.71.1.1 34885 2z00A 426 31.11 2p0aA 344 31.42 1atg 231 32.53 2zadA 345 32.53 1d3vA 323 32.56 c.42.1.1 32559 2r91A 286 33.26 1y9uA 323 33.41 c.94.1.1 116594 1nnfA 309 33.61 c.94.1.1 85903 1tqjA 230 34.46 c.1.2.2 107228 1zp4A 304 34.97 1v93A 296 35.21 c.1.23.1 100532 2h0aA 276 35.46 2o0rA 411 37.47 1u0tA 307 37.49 e.52.1.1 107567 2opiA 212 38.15 1xdwA 331 38.37 2cvjA 180 38.80 1ta9A 450 39.46 1dnpA 471 39.99 a.99.1.1,c.28.1.1 18775,31630 1q35A 320 40.06 c.94.1.1 95661 2ehhA 294 40.48 2q0oA 236 41.16 2bkwA 385 41.24 c.67.1.3 128714 2iuyA 342 41.58 2rfgA 297 41.71 1vljA 407 44.40 e.22.1.2 108832 2j0aA 280 45.25 2bs9A 503 45.78 b.71.1.2,c.1.8.3 129062,129063 2f6uA 234 48.26 c.1.4.1 133061 1uslA 170 48.34 c.121.1.1 99871 3cpxA 321 48.81 1w24A 182 49.17 d.159.1.7 120579 2eo5A 419 50.30 2pvpA 367 51.70 2pt2A 334 51.77 1lxjA 104 52.10 d.58.48.1 84736 2gu2A 312 52.41 1w3iA 293 53.14 c.1.10.1 109152 1y4tA 322 53.42 c.94.1.1 116464 1h1yA 228 54.27 c.1.2.2 76506 1yqeA 282 54.39 c.56.7.1 123879 1yloA 348 55.65 b.49.3.1,c.56.5.4 123659,123660 1h3fA 432 56.09 c.26.1.1,d.66.1.4 76631,76632 1ii7A 333 57.46 d.159.1.4 62415 2ojpA 292 57.68 3pmgA 561 58.25 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 3choA 610 58.58 1snyA 267 58.60 c.2.1.2 105833 1dxy 333 59.00 1vheA 373 60.76 b.49.3.1,c.56.5.4 100669,100670 1miwA 404 61.59 a.173.1.1,d.218.1.4 79162,79163 1f9aA 168 62.23 c.26.1.3 31602 2qryA 330 62.32 2aq4A 434 62.64 2onsA 314 63.21 2dpiA 420 63.48 d.240.1.1,e.8.1.7 131612,131613 1reqA 727 64.40 c.1.19.1,c.23.6.1 29620,31247 2qcuA 501 64.41 2pe3A 354 64.52 1z5hA 780 67.71 2g76A 335 68.88 1e4eA 343 69.45 c.30.1.2,d.142.1.1 59221,59222 2aebA 322 69.75 c.42.1.1 126617 1hkhA 279 70.11 c.69.1.12 90628 2qvbA 297 71.31 1nb9A 147 72.64 b.43.5.1 85515 1anfA 370 73.22 c.94.1.1 35776 1sbp 310 73.45 1ceo 343 74.24 2g4rA 160 76.56 2cukA 311 78.44 2v3gA 283 78.78 1atgA 231 79.69 c.94.1.1 35834 2atsA 292 80.68 c.1.10.1 127306 1tzzA 392 81.49 c.1.11.2,d.54.1.1 112896,112897 2id1A 130 81.86 1n08A 163 81.99 b.43.5.1 79730 4eugA 229 84.76 c.18.1.1 31019 1yqhA 109 86.10 d.58.48.1 123886 1vkfA 188 87.59 c.1.29.1 108656 2fp4B 395 88.58 c.23.4.1,d.142.1.4 133897,133898 1jl2A 156 89.91 c.55.3.1 66822