# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 8.43e-29 c.56.5.6 90921 1xovA 326 3.52e-25 b.34.11.4,c.56.5.6 122206,122207 2q7dA 346 0.7179 1iow 306 0.7706 3bijA 285 1.049 1cg2A 393 1.125 c.56.5.4,d.58.19.1 33844,39360 1iowA 306 1.136 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 2.400 e.22.1.2 67084 1gsa 316 2.647 3ce9A 354 3.629 1sbpA 310 3.886 c.94.1.1 35760 2a1rA 430 5.444 2i6jA 161 6.572 1gsaA 316 8.105 c.30.1.3,d.142.1.1 31718,41477 1xc1A 309 8.766 c.94.1.1 109543 1nnfA 309 10.19 c.94.1.1 85903 1rrmA 386 10.48 e.22.1.2 105081 1kq3A 376 10.53 e.22.1.2 68790 2eklA 313 11.23 1xdwA 331 11.36 1jx4A 352 12.53 d.240.1.1,e.8.1.7 90378,90379 1q35A 320 12.59 c.94.1.1 95661 2jejA 358 12.85 d.240.1.1,e.8.1.7 138284,138285 1xvxA 312 12.96 c.94.1.1 116097 2odtX 328 14.03 1ad2A 228 14.44 e.24.1.1 43353 2gh9A 386 14.69 1dxy 333 15.42 1u0tA 307 18.06 e.52.1.1 107567 2ov7A 137 18.62 1i7nA 309 19.13 c.30.1.5,d.142.1.3 83681,83682 2pcqA 283 20.44 1y4tA 322 20.88 c.94.1.1 116464 2i87A 364 21.05 2hdyA 440 21.83 1vheA 373 22.46 b.49.3.1,c.56.5.4 100669,100670 1yloA 348 22.87 b.49.3.1,c.56.5.4 123659,123660 2pt2A 334 23.62 2q0oA 236 23.99 1xjcA 169 25.85 c.37.1.10 115387 1dnpA 471 26.06 a.99.1.1,c.28.1.1 18775,31630 1p5dX 463 26.69 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1vljA 407 28.16 e.22.1.2 108832 2rfgA 297 28.70 1o2dA 371 28.80 e.22.1.2 86591 2nuwA 288 29.22 1vhoA 346 30.03 b.49.3.1,c.56.5.4 100694,100695 1y9uA 323 30.11 c.94.1.1 116594 2r91A 286 30.49 1ytvA 366 31.23 c.94.1.1 124016 2fp3A 316 31.35 2irpA 208 31.62 1atg 231 33.28 2bkwA 385 33.47 c.67.1.3 128714 2e7uA 424 33.65 1y0yA 353 34.25 b.49.3.1,c.56.5.4 122514,122515 1anfA 370 34.49 c.94.1.1 35776 2fk5A 200 35.17 1tfuA 157 35.41 c.26.1.3 106859 2f4qA 346 36.31 3pmgA 561 36.67 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1v93A 296 36.93 c.1.23.1 100532 2cvjA 180 37.38 2cukA 311 37.53 2j0aA 280 37.85 1hkhA 279 38.19 c.69.1.12 90628 1ta9A 450 38.82 2dpiA 420 38.95 d.240.1.1,e.8.1.7 131612,131613 2p0aA 344 40.45 1k0wA 231 40.63 c.74.1.1 77220 1od6A 160 40.95 c.26.1.3 86836 1lxjA 104 41.33 d.58.48.1 84736 2g76A 335 43.05 2ehhA 294 43.13 3b2yA 275 43.33 1uslA 170 46.57 c.121.1.1 99871 2z0mA 337 47.77 1vecA 206 47.78 c.37.1.19 100575 1xkyA 301 48.00 c.1.10.1 122094 1z5hA 780 48.66 1anf 370 50.38 2atsA 292 53.83 c.1.10.1 127306 3canA 182 53.89 2iuyA 342 54.23 1miwA 404 54.38 a.173.1.1,d.218.1.4 79162,79163 1hl2A 297 54.72 c.1.10.1 83581 2zadA 345 54.86 1amfA 233 56.13 c.94.1.1 35833 1nofA 383 56.75 b.71.1.2,c.1.8.3 92020,92021 1wwkA 307 57.11 1zp4A 304 57.21 1w3iA 293 57.96 c.1.10.1 109152 1qnaA 200 58.45 d.129.1.1,d.129.1.1 41226,41227 2eo5A 419 59.54 1sffA 426 64.23 c.67.1.4 105482 2f7lA 455 64.51 2qvbA 297 64.61 2pezA 179 65.15 2rb7A 364 66.57 2gcuA 245 67.48 1atgA 231 68.06 c.94.1.1 35834 2a0mA 316 68.25 c.42.1.1 125960 1li4A 432 68.76 c.2.1.4,c.23.12.3 84616,84617 3cpxA 321 70.71 2z00A 426 72.00 2g4rA 160 72.18 2pg9A 337 72.99 1a7j 290 74.17 1d4oA 184 74.37 c.31.1.4 31748 2ojpA 292 75.33 2e9yA 316 75.64 4eugA 229 75.71 c.18.1.1 31019 2onsA 314 76.33 2cp8A 54 77.87 a.5.2.1 130695 1j4aA 333 79.98 c.2.1.4,c.23.12.1 71502,71503 2gcgA 330 80.43 2d0iA 333 81.05 1tzzA 392 81.89 c.1.11.2,d.54.1.1 112896,112897 2hmcA 344 82.37 1t5iA 172 82.41 c.37.1.19 106450 1vgyA 393 82.64 c.56.5.4,d.58.19.1 100620,100621 1d3vA 323 83.87 c.42.1.1 32559 2pi1A 334 84.01 2f6uA 234 84.56 c.1.4.1 133061 1qz9A 416 84.76 c.67.1.3 96621 2o0rA 411 84.86 2q43A 418 87.10 c.56.5.4,d.58.19.1 139821,139822 3choA 610 87.51 2ew8A 249 87.52 c.2.1.2 132447 1zbfA 142 87.78 c.55.3.1 124850 1df7A 159 88.20 c.71.1.1 34885 2h5yA 254 88.95