# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.76e-29 c.56.5.6 90921 1xovA 326 7.85e-26 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.4168 c.56.5.4,d.58.19.1 33844,39360 1iow 306 1.041 1iowA 306 1.440 c.30.1.2,d.142.1.1 31713,41481 3bijA 285 1.442 2a1rA 430 1.793 2q7dA 346 1.837 1nnfA 309 3.215 c.94.1.1 85903 1gsa 316 3.424 1jq5A 370 4.178 e.22.1.2 67084 1sbpA 310 4.189 c.94.1.1 35760 2i6jA 161 4.585 1xvxA 312 6.486 c.94.1.1 116097 1xc1A 309 7.963 c.94.1.1 109543 2eklA 313 9.570 3ce9A 354 10.39 2hdyA 440 10.46 1ad2A 228 10.76 e.24.1.1 43353 1jx4A 352 11.10 d.240.1.1,e.8.1.7 90378,90379 1q35A 320 11.37 c.94.1.1 95661 1gsaA 316 11.64 c.30.1.3,d.142.1.1 31718,41477 2jejA 358 14.14 d.240.1.1,e.8.1.7 138284,138285 1rrmA 386 14.18 e.22.1.2 105081 1p5dX 463 14.33 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2odtX 328 14.58 1i7nA 309 16.33 c.30.1.5,d.142.1.3 83681,83682 2bkwA 385 16.60 c.67.1.3 128714 1kq3A 376 16.64 e.22.1.2 68790 2gh9A 386 17.60 2irpA 208 18.20 2pcqA 283 19.06 1v93A 296 19.31 c.1.23.1 100532 2fk5A 200 19.57 2fp3A 316 20.13 2i87A 364 20.62 2ov7A 137 20.90 1xdwA 331 21.06 1zp4A 304 21.66 1atg 231 21.67 2nuwA 288 22.55 1tfuA 157 22.61 c.26.1.3 106859 1vhoA 346 22.66 b.49.3.1,c.56.5.4 100694,100695 2dpiA 420 22.82 d.240.1.1,e.8.1.7 131612,131613 1d3vA 323 22.98 c.42.1.1 32559 1od6A 160 23.68 c.26.1.3 86836 2f4qA 346 24.25 1o2dA 371 24.38 e.22.1.2 86591 1dnpA 471 24.48 a.99.1.1,c.28.1.1 18775,31630 1uslA 170 24.79 c.121.1.1 99871 1dxy 333 25.13 2p0aA 344 26.20 1hkhA 279 26.69 c.69.1.12 90628 2rfgA 297 27.10 3b2yA 275 27.44 2cvjA 180 27.75 1u0tA 307 28.65 e.52.1.1 107567 1k0wA 231 30.18 c.74.1.1 77220 2pt2A 334 30.21 2h0aA 276 30.52 1lxjA 104 31.22 d.58.48.1 84736 2g76A 335 33.02 2bs9A 503 34.48 b.71.1.2,c.1.8.3 129062,129063 2rb7A 364 34.61 2r91A 286 36.16 1df7A 159 36.60 c.71.1.1 34885 2cukA 311 36.93 3pmgA 561 37.84 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1xjcA 169 37.91 c.37.1.10 115387 2iuyA 342 37.91 1h1yA 228 38.48 c.1.2.2 76506 1y4tA 322 39.08 c.94.1.1 116464 1y9uA 323 39.72 c.94.1.1 116594 1yqeA 282 41.40 c.56.7.1 123879 1tqjA 230 41.78 c.1.2.2 107228 2q43A 418 42.35 c.56.5.4,d.58.19.1 139821,139822 2atsA 292 42.53 c.1.10.1 127306 2eo5A 419 42.72 1miwA 404 43.37 a.173.1.1,d.218.1.4 79162,79163 2f7lA 455 43.48 1wwkA 307 43.50 1vheA 373 43.81 b.49.3.1,c.56.5.4 100669,100670 1sffA 426 44.30 c.67.1.4 105482 1yloA 348 44.47 b.49.3.1,c.56.5.4 123659,123660 2a0mA 316 44.67 c.42.1.1 125960 2z00A 426 44.78 2q0oA 236 44.85 2aebA 322 45.38 c.42.1.1 126617 2qryA 330 45.67 2ojpA 292 46.02 1ytvA 366 46.40 c.94.1.1 124016 1vljA 407 47.93 e.22.1.2 108832 1t3iA 420 48.56 c.67.1.3 106354 1ceo 343 49.90 2ehhA 294 50.32 1h3fA 432 51.43 c.26.1.1,d.66.1.4 76631,76632 2opiA 212 51.75 1y0yA 353 52.16 b.49.3.1,c.56.5.4 122514,122515 2qvbA 297 52.78 1z5hA 780 53.53 3canA 182 53.78 1eg5A 384 54.01 c.67.1.3 34429 1nofA 383 54.63 b.71.1.2,c.1.8.3 92020,92021 1w3iA 293 54.83 c.1.10.1 109152 2d0iA 333 55.08 1atgA 231 55.67 c.94.1.1 35834 1hl2A 297 56.74 c.1.10.1 83581 1t6cA 315 56.79 c.55.1.8,c.55.1.8 106558,106559 2aq4A 434 57.34 1d4oA 184 58.46 c.31.1.4 31748 2pi1A 334 58.75 2e7uA 424 58.86 1reqA 727 59.63 c.1.19.1,c.23.6.1 29620,31247 1a7j 290 61.43 2gcgA 330 61.45 1j4aA 333 63.40 c.2.1.4,c.23.12.1 71502,71503 1vgyA 393 63.42 c.56.5.4,d.58.19.1 100620,100621 1xfkA 336 64.97 c.42.1.1 115264 1xkyA 301 65.06 c.1.10.1 122094 2hmcA 344 66.35 2dbqA 334 66.72 1brtA 277 67.02 c.69.1.12 34699 1anfA 370 67.05 c.94.1.1 35776 1ii7A 333 68.71 d.159.1.4 62415 2j0aA 280 69.01 2pbqA 178 69.22 2onsA 314 69.32 1vecA 206 69.40 c.37.1.19 100575 1r1mA 164 69.40 d.79.7.1 96820 2e9yA 316 69.67 1wohA 305 70.67 c.42.1.1 109446 1snyA 267 71.75 c.2.1.2 105833 1ta9A 450 72.36 2dr3A 247 73.20 2pg9A 337 73.61 2f6uA 234 74.20 c.1.4.1 133061 2ppwA 216 77.81 1pvtA 238 78.49 c.74.1.1 95189 2bwnA 401 79.42 c.67.1.4 129368 1rd5A 262 81.00 c.1.2.4 111772 2pezA 179 81.35 1a8qA 274 81.67 c.69.1.12 34702 2j6iA 364 82.16 3cpxA 321 82.17 1e4eA 343 82.62 c.30.1.2,d.142.1.1 59221,59222 2fssA 365 83.14 1ivnA 190 83.83 c.23.10.5 83719 1gq6A 313 88.19 c.42.1.1 70341 1qnaA 200 88.77 d.129.1.1,d.129.1.1 41226,41227 1o1xA 155 88.82 c.121.1.1 86553 2gzsA 278 89.24 1yb1A 272 89.96 c.2.1.2 116599