# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.21e-25 c.56.5.6 90921 1xovA 326 3.76e-22 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.2172 3b2yA 275 2.273 1gsa 316 2.367 2bcoA 350 3.119 c.56.5.7 128302 1iowA 306 3.873 c.30.1.2,d.142.1.1 31713,41481 1iow 306 4.039 1sbpA 310 5.811 c.94.1.1 35760 1o2dA 371 6.301 e.22.1.2 86591 2onsA 314 6.436 1atgA 231 9.725 c.94.1.1 35834 1rrmA 386 10.31 e.22.1.2 105081 1atg 231 10.42 3ce9A 354 10.44 1dxy 333 11.35 1hl2A 297 11.52 c.1.10.1 83581 2q0oA 236 11.64 2gu2A 312 12.41 2fqxA 318 13.25 2q7dA 346 13.47 1ycdA 243 13.66 1ccwA 137 14.85 c.23.6.1 31238 1e4eA 343 15.84 c.30.1.2,d.142.1.1 59221,59222 2eklA 313 17.06 1geqA 248 18.48 c.1.2.4 28589 2pcqA 283 19.21 1vljA 407 19.33 e.22.1.2 108832 1kq3A 376 19.70 e.22.1.2 68790 1d4oA 184 19.96 c.31.1.4 31748 2q4zA 312 20.22 2ehhA 294 20.54 2p4qA 497 20.67 1pnoA 180 21.24 c.31.1.4 94953 2o3aA 178 22.63 1amfA 233 22.73 c.94.1.1 35833 1jq5A 370 23.24 e.22.1.2 67084 2qs9A 194 23.30 2pvpA 367 23.55 1gsaA 316 23.62 c.30.1.3,d.142.1.1 31718,41477 2nuwA 288 23.66 1jmkC 230 24.96 c.69.1.22 71747 3cumA 302 26.02 1xdwA 331 26.13 1w3iA 293 26.72 c.1.10.1 109152 2rfgA 297 27.89 1pswA 348 28.30 c.87.1.7 88287 2an1A 292 28.41 2qryA 330 28.50 1c8bA 371 29.56 c.56.1.2 59082 2hxwA 237 30.09 2bkwA 385 30.70 c.67.1.3 128714 2h5yA 254 31.14 1u0tA 307 31.80 e.52.1.1 107567 1d3vA 323 32.34 c.42.1.1 32559 1nmsA 249 32.52 c.17.1.1 85879 1r1dA 247 33.47 c.69.1.29 96813 1sffA 426 36.29 c.67.1.4 105482 1c7qA 445 36.35 c.80.1.2 35307 3cc1A 433 36.36 1ta9A 450 37.17 1lehA 364 37.67 c.2.1.7,c.58.1.1 30268,33916 1ei9A 279 37.77 c.69.1.13 34713 1h1yA 228 37.87 c.1.2.2 76506 2cukA 311 38.29 2ojpA 292 38.87 2i87A 364 39.32 1li4A 432 39.56 c.2.1.4,c.23.12.3 84616,84617 3c9fA 557 39.59 1oj7A 408 42.11 e.22.1.2 103971 2jfkA 433 42.46 1i7nA 309 42.53 c.30.1.5,d.142.1.3 83681,83682 2jejA 358 42.91 d.240.1.1,e.8.1.7 138284,138285 2aioA 269 43.49 d.157.1.1 126829 1jx4A 352 44.06 d.240.1.1,e.8.1.7 90378,90379 1tkjA 284 44.69 c.56.5.4 119296 2i6jA 161 45.12 1ufoA 238 46.82 c.69.1.27 99344 1rtqA 299 47.45 c.56.5.4 97819 1zetA 388 47.85 d.240.1.1,e.8.1.7 124997,124998 2pgdA 482 49.50 a.100.1.1,c.2.1.6 18778,30190 1iktA 120 50.28 d.106.1.1 66188 2v9dA 343 51.87 1yqeA 282 52.42 c.56.7.1 123879 2r91A 286 53.34 2yxbA 161 55.14 1obrA 326 55.20 c.56.5.2 33828 2p0aA 344 55.40 1dxyA 333 57.48 c.2.1.4,c.23.12.1 30094,31354 2d0iA 333 57.62 2odtX 328 57.72 2pblA 262 57.94 1amf 233 59.69 2g76A 335 61.82 1uxoA 192 62.09 c.69.1.31 108121 1aj2A 282 63.28 c.1.21.1 29665 1xvxA 312 63.31 c.94.1.1 116097 1cg2A 393 63.94 c.56.5.4,d.58.19.1 33844,39360 1jihA 531 64.08 d.240.1.1,e.8.1.7 90374,90375 1tqhA 247 64.96 c.69.1.29 107225 2dpiA 420 65.49 d.240.1.1,e.8.1.7 131612,131613 2pgd 482 65.79 2id1A 130 65.92 1u3dA 509 66.50 a.99.1.1,c.28.1.1 107638,107639 1tuoA 464 66.90 2fssA 365 67.65 1ad2A 228 67.84 e.24.1.1 43353 1uslA 170 68.33 c.121.1.1 99871 1qz5A 375 68.38 c.55.1.1,c.55.1.1 96614,96615 2i3dA 249 68.62 1yqgA 263 70.95 2pezA 179 71.12 1kamA 194 76.17 c.26.1.3 72254 1z7aA 308 76.24 c.6.2.6 124591 1anfA 370 77.33 c.94.1.1 35776 1owlA 484 77.40 a.99.1.1,c.28.1.1 93647,93648 1x8hA 228 78.78 d.157.1.1 114961 2dztA 248 78.85 4eugA 229 78.96 c.18.1.1 31019 1wwkA 307 79.42 1n08A 163 80.18 b.43.5.1 79730 1q0qA 406 80.49 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1brtA 277 81.23 c.69.1.12 34699 2hmcA 344 82.13 1vhoA 346 82.23 b.49.3.1,c.56.5.4 100694,100695 2hxmA 223 82.35 c.18.1.1 136857 2grrA 161 83.37 2atsA 292 84.11 c.1.10.1 127306 2pjkA 178 85.63 1p5dX 463 86.09 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1yloA 348 86.24 b.49.3.1,c.56.5.4 123659,123660 1aj2 282 86.68 1ecfA 504 88.04 c.61.1.1,d.153.1.1 34053,41820 1t70A 255 88.16 d.159.1.9 112275 3cniA 156 88.55 2c1cA 312 89.24 c.56.5.1 129630 1thtA 305 89.32 c.69.1.13 34711 2q8uA 336 89.41