# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.62e-11 c.56.5.6 90921 1xovA 326 8.25e-10 b.34.11.4,c.56.5.6 122206,122207 1u3dA 509 1.726 a.99.1.1,c.28.1.1 107638,107639 3bijA 285 4.739 1nmsA 249 6.263 c.17.1.1 85879 1iowA 306 7.064 c.30.1.2,d.142.1.1 31713,41481 1sbpA 310 8.907 c.94.1.1 35760 2hufA 393 9.369 1iow 306 9.399 2p6wA 213 11.14 1ta9A 450 12.96 2i0fA 157 13.97 1lhpA 312 13.97 c.72.1.5 77960 1eexB 224 14.11 c.51.3.1 33213 2o4cA 380 15.93 2dbqA 334 17.33 1sbp 310 17.92 2fp3A 316 19.41 2odtX 328 19.59 1dbwA 126 19.76 c.23.1.1 31095 2p35A 259 20.94 2j07A 420 22.10 a.99.1.1,c.28.1.1 137891,137892 1dxyA 333 22.73 c.2.1.4,c.23.12.1 30094,31354 2i8lA 156 22.75 1xmpA 170 22.84 c.23.8.1 115521 1iukA 140 23.42 c.2.1.8 83712 1dxy 333 24.29 2onsA 314 25.04 1xc1A 309 25.29 c.94.1.1 109543 1np7A 489 25.39 a.99.1.1,c.28.1.1 80677,80678 2bkwA 385 26.01 c.67.1.3 128714 1twyA 290 26.57 c.94.1.1 112767 2qs9A 194 26.81 1wyuA 438 26.96 c.67.1.7 121452 1xs5A 241 27.18 c.94.1.1 115912 3ce9A 354 27.24 1vicA 262 27.32 c.68.1.13 100756 1t0bA 252 27.50 c.23.16.6 106199 1o2dA 371 27.79 e.22.1.2 86591 2amjA 204 28.03 2f7lA 455 29.75 1qdlB 195 30.00 c.23.16.1 31437 1yp1A 202 30.42 1w4xA 542 30.49 c.3.1.5,c.3.1.5 109171,109172 1tezA 474 30.66 a.99.1.1,c.28.1.1 112409,112410 1iugA 352 30.66 c.67.1.3 90699 2c92A 160 30.92 1i1qB 192 31.06 c.23.16.1 61544 1l7dA 384 31.36 c.2.1.4,c.23.12.2 77774,77775 2cukA 311 32.16 2d0oB 125 32.65 c.51.3.2 131078 1nbwB 117 33.18 c.51.3.2 80396 1ccwA 137 33.27 c.23.6.1 31238 1p5dX 463 33.37 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 3b8xA 390 34.26 1p99A 295 34.69 c.94.1.1 94384 1d4aA 273 35.36 c.23.5.3 31219 1xvxA 312 35.37 c.94.1.1 116097 1qp8A 303 36.73 c.2.1.4,c.23.12.1 30092,31352 1rrmA 386 37.05 e.22.1.2 105081 2i7cA 283 37.44 1bg6A 359 39.23 a.100.1.5,c.2.1.6 18810,30214 1h7eA 245 39.41 c.68.1.13 60717 2dr1A 386 39.78 1wwkA 307 40.27 1qczA 169 40.56 c.23.8.1 31276 1i7qB 193 40.56 c.23.16.1 61902 1u7nA 336 40.70 c.77.1.4 107726 1wl8A 189 40.87 c.23.16.1 120997 1zud1 251 41.76 1lvwA 295 42.80 c.68.1.6 84723 2gcgA 330 42.93 2i6jA 161 43.41 1j4aA 333 44.80 c.2.1.4,c.23.12.1 71502,71503 2an1A 292 45.08 1uxoA 192 46.17 c.69.1.31 108121 1sqsA 242 46.75 c.23.5.5 98968 2h88A 621 48.34 2yxbA 161 49.60 1jq5A 370 49.74 e.22.1.2 67084 1atlA 202 50.47 d.92.1.9 40322 1chuA 540 50.73 a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1vhqA 232 50.79 c.23.16.2 100696 2dgkA 452 51.09 2gu2A 312 51.28 1hdoA 206 51.57 c.2.1.2 60965 1budA 197 52.84 d.92.1.9 40328 1e5kA 201 53.09 c.68.1.8 34578 1jf9A 408 53.09 c.67.1.3 62931 2d59A 144 53.96 c.2.1.8 131266 1kufA 203 54.20 d.92.1.9 73007 1jixA 351 54.39 c.87.1.1 63081 2z9wA 392 55.63 1gdhA 320 56.06 c.2.1.4,c.23.12.1 30095,31355 1kmkA 406 56.70 c.67.1.3 68696 1xdwA 331 57.02 1i6aA 219 57.04 c.94.1.1 61827 1ydgA 211 57.65 c.23.5.8 116614 1kugA 203 57.73 d.92.1.9 73008 2i5eA 211 57.78 1vljA 407 58.18 e.22.1.2 108832 1y0pA 571 59.77 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1y80A 210 60.48 2j4dA 525 60.73 1owlA 484 60.73 a.99.1.1,c.28.1.1 93647,93648 2q5cA 196 61.19 2q7dA 346 61.94 2ef5A 290 62.49 1e4eA 343 62.58 c.30.1.2,d.142.1.1 59221,59222 1m6sA 347 62.75 c.67.1.1 78701 1wstA 417 64.76 c.67.1.1 121244 1zmtA 254 64.98 c.2.1.2 125363 1u0sY 118 65.45 c.23.1.1 107566 2arkA 188 65.98 c.23.5.8 127202 2aotA 292 66.17 c.66.1.19 127098 1usgA 346 66.34 c.93.1.1 99864 2a5lA 200 66.44 c.23.5.8 126176 2hxwA 237 67.00 1srrA 124 67.07 c.23.1.1 31110 2is8A 164 68.37 1ycdA 243 69.17 1gq6A 313 69.37 c.42.1.1 70341 2q0sA 216 69.43 1g8lA 411 70.16 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2a9oA 120 70.72 c.23.1.1 126444 1qnaA 200 71.06 d.129.1.1,d.129.1.1 41226,41227 1h5rA 293 71.13 c.68.1.6 65623 1wqaA 455 71.15 2dvmA 439 71.93 1tmyA 120 72.22 c.23.1.1 31083 3b2nA 133 73.32 1kgsA 225 73.40 a.4.6.1,c.23.1.1 68596,68597 1lqtA 456 73.89 c.3.1.1,c.4.1.1 74198,74199 2f62A 161 75.03 c.23.14.1 133021 1t13A 158 75.10 2g76A 335 75.50 2v3gA 283 75.53 1zx1A 231 75.62 c.23.5.3 125760 1s6yA 450 77.70 c.2.1.5,d.162.1.2 105314,105315 2q4zA 312 78.40 2r00A 336 78.77 3brkX 420 78.85 1x0lA 333 79.23 1bykA 255 79.39 c.93.1.1 35706 1qmgA 524 79.55 a.100.1.2,c.2.1.6 18785,30182 2p2sA 336 79.72 1vi1A 345 79.74 c.77.1.4 100724 1r55A 214 79.78 d.92.1.9 111694 1z15A 344 80.44 2obxA 157 80.51 1eziA 228 81.33 c.68.1.13 34512 2qwxA 231 81.92 2qvcA 313 82.91 2pi1A 334 83.06 1ka9H 200 83.53 c.23.16.1 77308 1y81A 138 84.29 c.2.1.8 122731 1yp2A 451 84.86 b.81.1.4,c.68.1.6 123798,123799 2cb1A 412 85.29 2bs3A 656 85.43 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1fmtA 314 86.20 b.46.1.1,c.65.1.1 25758,34174 2yrrA 353 86.50 1u11A 182 87.51 c.23.8.1 107576 1xfkA 336 88.18 c.42.1.1 115264 2g1uA 155 88.54 1yqeA 282 88.75 c.56.7.1 123879 1t4bA 367 88.80 c.2.1.3,d.81.1.1 106406,106407 1vhvA 268 88.93 c.90.1.1 100704 1uj6A 227 89.00 c.124.1.4,d.58.40.1 107898,107899 2citA 282 89.00 c.1.8.3 130499