# List of top-scoring protein chains for T0425.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.66e-40 c.56.5.6 90921 1xovA 326 7.82e-17 b.34.11.4,c.56.5.6 122206,122207 1ziuA 370 1.424 c.94.1.1 125138 1nt0A 286 3.234 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1ot8A 239 3.345 d.211.1.1 93507 2ga8A 359 7.542 1r6zA 509 12.00 b.34.14.1,c.94.1.1 97169,97170 2jmpA 107 13.30 1y4tA 322 15.38 c.94.1.1 116464 2yxbA 161 15.85 2qryA 330 16.05 1e5dA 402 17.05 c.23.5.1,d.157.1.3 31208,42061 1iovA 306 18.30 c.30.1.2,d.142.1.1 31714,41482 1iowA 306 18.71 c.30.1.2,d.142.1.1 31713,41481 3b5nD 64 18.72 1i9sA 210 19.34 c.45.1.1 62099 1qokA 282 20.83 b.1.1.1,b.1.1.1 20492,20493 1mdqA 371 21.24 c.94.1.1 35783 1mh3A 421 22.05 a.4.1.1,c.94.1.1 79112,79113 1yznA 185 24.25 c.37.1.8 124284 1nl5A 366 24.90 c.94.1.1 91953 1ytvA 366 24.92 c.94.1.1 124016 1sbpA 310 25.70 c.94.1.1 35760 1gq6A 313 26.27 c.42.1.1 70341 2c46A 241 26.37 1mdp1 363 27.06 1ezoA 370 27.69 c.94.1.1 59539 1fqbA 370 27.78 c.94.1.1 59985 1t0kA 381 27.83 c.94.1.1 106214 1anfA 370 27.90 c.94.1.1 35776 1mpbA 370 27.92 c.94.1.1 35780 1n3xA 366 27.96 c.94.1.1 91609 2pvpA 367 28.06 1nmuA 382 28.13 c.94.1.1 80665 1iudA 380 28.35 c.94.1.1 35786 2opvA 85 28.38 1y4cA 494 29.68 2nvuB 805 30.86 c.111.1.2,c.94.1.1 138661,138662 1a7lA 389 31.02 c.94.1.1 35787 2ok2A 402 31.17 1m22A 503 32.37 c.117.1.1 78464 1r66A 337 33.61 c.2.1.2 97146 1r6dA 337 34.75 c.2.1.2 97148 1ei1A 391 35.80 d.14.1.3,d.122.1.2 37570,41104 2j13A 247 37.30 c.6.2.3 137934 1ny1A 240 37.99 c.6.2.3 86395 1pk3A 89 39.03 a.60.1.2 118715 1jvyA 372 39.86 c.94.1.1 63308 3c4mA 539 42.40 1szbA 170 43.46 b.23.1.1,g.3.11.1 106145,106146 2vgqA 477 44.63 2fl7A 232 45.18 1svxB 395 47.92 c.94.1.1 106059 1hsjA 487 48.15 a.4.5.28,c.94.1.1 61237,61238 1qwgA 251 48.19 c.1.27.1 96473 2r3bA 310 49.41 1laxA 370 49.66 c.94.1.1 84576 1ti8A 314 50.30 b.19.1.2 119279 2fvuA 222 50.64 1b24A 188 51.28 d.95.2.1,d.95.2.1 40573,40574 1fmcA 255 51.85 c.2.1.2 29856 1w1b1 257 52.41 1im5A 180 52.72 c.33.1.3 66211 2ef5A 290 54.13 1f2fA 104 54.55 d.93.1.1 40455 1e19A 314 54.59 c.73.1.1 34967 2eivA 291 54.82 1i1rB 181 55.13 a.26.1.1 61548 1bkmA 113 56.28 d.93.1.1 40426 1uikA 418 56.43 b.82.1.2,b.82.1.2 107878,107879 1nzlA 103 56.95 d.93.1.1 86453 1p13A 102 57.16 d.93.1.1 93892 1is0A 106 57.30 d.93.1.1 66299 1shaA 104 57.57 d.93.1.1 40424 1kc2A 103 57.90 d.93.1.1 72291 1skjA 113 58.87 d.93.1.1 40427 1w17A 263 59.13 c.6.2.3 120573 2rdo9 233 62.97 2exxA 306 67.14 2g2dA 193 67.24 1pk1B 89 69.85 a.60.1.2 118712 2fpoA 202 70.21 c.66.1.46 133909 2b78A 385 71.81 b.122.1.9,c.66.1.51 128025,128026 2gi3A 476 75.02 c.117.1.1 135220 1o4vA 183 75.56 c.23.8.1 86628 2dt8A 280 75.67 2pnfA 248 75.98 2aepH 217 76.72 b.1.1.2 126639 1lroA 267 76.89 c.1.10.4 78161 1ob8A 135 77.28 c.52.1.18 111627 1s4iA 175 77.46 1jd7A 453 78.15 b.71.1.1,c.1.8.1 77104,77105 2gfqA 298 79.08 c.56.7.1 135106 1rfzA 168 79.40 a.195.1.1 97411 1kxhA 448 80.50 b.71.1.1,c.1.8.1 73151,73152 1g94A 448 80.62 b.71.1.1,c.1.8.1 65169,65170 1xtlA 175 81.28 2z5yA 513 82.22 1jd9A 453 82.43 b.71.1.1,c.1.8.1 77106,77107 2gya2 222 82.85 1aqmA 453 83.39 b.71.1.1,c.1.8.1 27717,28704 1p6sA 111 83.51 b.55.1.1 104075 2c30A 321 84.94 2cqyA 108 85.27 2nxiA 263 86.43 1bklA 113 88.27 d.93.1.1 40428 2z5xA 513 89.03 1ympA 135 89.62