# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.85e-30 c.56.5.6 90921 1xovA 326 2.28e-26 b.34.11.4,c.56.5.6 122206,122207 2h0aA 276 0.3420 3bijA 285 0.3792 2odtX 328 1.843 1iowA 306 1.932 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 2.252 e.22.1.2 67084 1cg2A 393 3.027 c.56.5.4,d.58.19.1 33844,39360 1gsa 316 3.760 1ujnA 348 4.435 e.22.1.1 99460 2rb7A 364 5.412 1dnpA 471 5.925 a.99.1.1,c.28.1.1 18775,31630 2i87A 364 6.299 2dpiA 420 7.331 d.240.1.1,e.8.1.7 131612,131613 1eg5A 384 8.180 c.67.1.3 34429 1yloA 348 8.921 b.49.3.1,c.56.5.4 123659,123660 1g67A 225 9.039 c.1.3.1 60311 1dv2A 452 9.153 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1ccwA 137 9.311 c.23.6.1 31238 3cpxA 321 9.464 1yqeA 282 9.799 c.56.7.1 123879 1vljA 407 10.24 e.22.1.2 108832 1iow 306 11.00 2ef5A 290 12.28 1vgyA 393 12.36 c.56.5.4,d.58.19.1 100620,100621 2cukA 311 12.45 3ce9A 354 12.47 2fuvA 549 12.72 1mldA 314 14.73 c.2.1.5,d.162.1.1 30122,42089 1e4eA 343 14.94 c.30.1.2,d.142.1.1 59221,59222 2q7dA 346 15.87 1dv1A 449 15.89 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1o2dA 371 16.21 e.22.1.2 86591 1cs1A 386 17.18 c.67.1.3 34399 1byiA 224 17.43 c.37.1.10 32199 1uc8A 280 17.92 c.30.1.6,d.142.1.7 99165,99166 1vhoA 346 18.15 b.49.3.1,c.56.5.4 100694,100695 1byi 224 18.50 1uslA 170 19.01 c.121.1.1 99871 1rrmA 386 19.72 e.22.1.2 105081 2o3aA 178 19.79 1gsaA 316 20.14 c.30.1.3,d.142.1.1 31718,41477 1tca 317 20.34 2j0aA 280 21.13 1ta9A 450 21.26 1g3qA 237 22.52 c.37.1.10 60237 2yrrA 353 22.61 2nuwA 288 23.29 1p5dX 463 23.34 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 3cyjA 372 23.66 2vguA 407 23.74 1nnfA 309 23.90 c.94.1.1 85903 2rfgA 297 25.04 2yxbA 161 26.81 3c3kA 285 26.97 2z1mA 345 28.19 2pe3A 354 28.51 1o5kA 306 29.10 c.1.10.1 92504 1ukz 203 29.20 1o1xA 155 29.51 c.121.1.1 86553 3ct9A 356 29.74 2qh8A 302 30.47 2fvgA 340 31.09 b.49.3.1,c.56.5.4 134201,134202 1fnoA 417 32.67 d.58.19.1,c.56.5.4 70145,75841 2ehhA 294 32.80 2viaA 405 33.30 1ys7A 233 34.00 a.4.6.1,c.23.1.1 123961,123962 2dr1A 386 34.18 2r91A 286 34.89 1y0yA 353 34.92 b.49.3.1,c.56.5.4 122514,122515 1ytvA 366 35.00 c.94.1.1 124016 1ehiA 377 35.03 c.30.1.2,d.142.1.1 31716,41484 1ra0A 430 36.16 b.92.1.2,c.1.9.5 111756,111757 1k2yX 463 36.26 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1wqaA 455 37.03 1omp 370 37.61 1anf 370 37.87 2qyvA 487 38.98 1x31B 404 39.16 2yutA 207 40.14 1sbpA 310 40.44 c.94.1.1 35760 1tuoA 464 40.90 4eugA 229 40.97 c.18.1.1 31019 1np6A 174 41.02 c.37.1.10 85954 1k0wA 231 41.49 c.74.1.1 77220 3b2yA 275 43.05 1vheA 373 43.10 b.49.3.1,c.56.5.4 100669,100670 1laxA 370 43.78 c.94.1.1 84576 4xis 387 43.93 2j07A 420 44.05 a.99.1.1,c.28.1.1 137891,137892 2q4zA 312 44.08 2pcqA 283 45.12 2gcgA 330 46.32 1xjcA 169 46.96 c.37.1.10 115387 1dhpA 292 47.86 c.1.10.1 29097 3xis 387 49.12 1ycdA 243 49.51 2alzA 390 49.76 d.240.1.1,e.8.1.7 126994,126995 3brqA 296 49.79 1tfuA 157 50.43 c.26.1.3 106859 1kq3A 376 50.49 e.22.1.2 68790 1hi9A 274 51.21 c.99.1.1 61063 1ja1A 622 52.47 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2q43A 418 53.18 c.56.5.4,d.58.19.1 139821,139822 1kjnA 157 55.43 c.115.1.1 72614 1cs0A 1073 55.99 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1bg6A 359 56.87 a.100.1.5,c.2.1.6 18810,30214 1yadA 221 57.01 2bjvA 265 57.31 1c0pA 363 57.42 c.4.1.2,d.16.1.3 30647,37934 1mrzA 293 57.67 b.43.5.1,c.26.1.3 91452,91453 1nal1 297 57.75 1xkyA 301 57.86 c.1.10.1 122094 2a0mA 316 57.89 c.42.1.1 125960 2ojpA 292 58.17 1gtvA 214 59.69 c.37.1.1 70537 1hdoA 206 60.06 c.2.1.2 60965 1ad4A 266 60.17 c.1.21.1 29670 1bx4A 345 61.42 c.72.1.1 34935 3b4uA 294 61.42 1amfA 233 61.62 c.94.1.1 35833 2j44A 217 62.05 1z2iA 358 62.07 4mbp 370 62.16 2rgyA 290 62.55 2hjpA 290 62.76 1id1A 153 63.07 c.2.1.9 62286 1wcwA 261 63.27 3canA 182 63.32 1ye8A 178 64.12 c.37.1.11 123010 1pswA 348 65.18 c.87.1.7 88287 2id1A 130 65.24 1uhvA 500 66.68 b.71.1.2,c.1.8.3 99402,99403 1tkjA 284 66.97 c.56.5.4 119296 1v9nA 360 67.26 1sbp 310 68.19 2a6lA 292 68.28 c.1.10.1 126285 2r78A 117 69.69 1vecA 206 69.72 c.37.1.19 100575 1amf 233 69.77 1gq6A 313 69.83 c.42.1.1 70341 1muwA 386 69.86 c.1.15.3 79495 2rghA 571 70.25 1xfoA 357 71.85 b.49.3.1,c.56.5.4 115265,115266 1w3iA 293 71.85 c.1.10.1 109152 2qt3A 403 73.11 1hl2A 297 73.34 c.1.10.1 83581 2eenA 183 73.72 2ghaA 382 73.94 2a6nA 292 75.00 c.1.10.1 126289 8abp 306 75.12 2ar9A 278 75.83 2dvzA 314 76.14 1u8sA 192 76.79 d.58.18.5,d.58.18.5 107737,107738 1qq9A 284 77.26 c.56.5.4 33841 2o1sA 621 77.41 2hxmA 223 77.83 c.18.1.1 136857 2o20A 332 77.95 2o5aA 125 78.15 2acaA 189 78.33 d.63.1.2 126545 1f0kA 364 79.59 c.87.1.2 35465 2irpA 208 79.77 2o4cA 380 79.80 2bv9A 290 80.34 c.1.8.3 129242 2aebA 322 80.88 c.42.1.1 126617 1lssA 140 81.08 c.2.1.9 74246 2ayyA 121 81.13 c.23.1.6 127576 1auk 489 81.52 1p3wA 404 82.88 c.67.1.3 87752 2f1kA 279 83.84 a.100.1.12,c.2.1.6 132772,132773 2z7bA 270 86.19 2ax4A 198 86.50 1j2rA 199 86.94 c.33.1.3 90788 1ur5A 309 87.49 c.2.1.5,d.162.1.1 99807,99808 1xmxA 385 88.96 c.52.1.26 115568 2yw2A 424 89.53 1qwgA 251 89.60 c.1.27.1 96473