# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 8.93e-31 c.56.5.6 90921 1xovA 326 4.19e-26 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.7965 2odtX 328 1.227 1iowA 306 2.116 c.30.1.2,d.142.1.1 31713,41481 2h0aA 276 2.452 1ccwA 137 3.022 c.23.6.1 31238 1vgyA 393 3.022 c.56.5.4,d.58.19.1 100620,100621 1gsa 316 3.172 2dpiA 420 3.310 d.240.1.1,e.8.1.7 131612,131613 1iow 306 3.739 1vljA 407 3.762 e.22.1.2 108832 2i87A 364 4.090 1yloA 348 4.196 b.49.3.1,c.56.5.4 123659,123660 1dv1A 449 4.860 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2rb7A 364 6.493 1jq5A 370 6.584 e.22.1.2 67084 1dv2A 452 6.629 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2q7dA 346 6.776 1rrmA 386 7.637 e.22.1.2 105081 2cukA 311 8.607 1kjnA 157 8.952 c.115.1.1 72614 2yxbA 161 9.364 1ujnA 348 9.826 e.22.1.1 99460 1dnpA 471 9.830 a.99.1.1,c.28.1.1 18775,31630 2fuvA 549 11.10 1xjcA 169 11.71 c.37.1.10 115387 1nnfA 309 11.86 c.94.1.1 85903 1mldA 314 12.70 c.2.1.5,d.162.1.1 30122,42089 2qyvA 487 12.79 1vecA 206 13.07 c.37.1.19 100575 1q35A 320 13.79 c.94.1.1 95661 1e4eA 343 13.94 c.30.1.2,d.142.1.1 59221,59222 3cyjA 372 14.00 1x31B 404 14.89 1cg2A 393 15.47 c.56.5.4,d.58.19.1 33844,39360 2ef5A 290 16.02 1wcwA 261 16.21 1yqeA 282 18.11 c.56.7.1 123879 1ukz 203 18.87 2fiuA 99 19.82 d.58.4.16 133537 1o1xA 155 20.15 c.121.1.1 86553 1gsaA 316 21.90 c.30.1.3,d.142.1.1 31718,41477 1t3iA 420 22.91 c.67.1.3 106354 1g67A 225 23.36 c.1.3.1 60311 1ytvA 366 23.45 c.94.1.1 124016 2j0aA 280 23.49 1qwgA 251 23.69 c.1.27.1 96473 1eg5A 384 24.61 c.67.1.3 34429 1fnoA 417 24.85 d.58.19.1,c.56.5.4 70145,75841 1np6A 174 25.91 c.37.1.10 85954 1wqaA 455 26.52 1g3qA 237 27.19 c.37.1.10 60237 1vhoA 346 27.72 b.49.3.1,c.56.5.4 100694,100695 4xis 387 28.86 1lssA 140 28.88 c.2.1.9 74246 1hdoA 206 29.48 c.2.1.2 60965 1tuoA 464 31.47 1h1yA 228 32.08 c.1.2.2 76506 1y9uA 323 33.02 c.94.1.1 116594 1n08A 163 33.03 b.43.5.1 79730 1k0wA 231 33.21 c.74.1.1 77220 2o3aA 178 33.46 2q43A 418 34.39 c.56.5.4,d.58.19.1 139821,139822 1uc8A 280 34.66 c.30.1.6,d.142.1.7 99165,99166 1byiA 224 35.23 c.37.1.10 32199 3cpxA 321 35.36 3xis 387 36.76 2f7lA 455 36.85 1byi 224 37.03 2alzA 390 37.12 d.240.1.1,e.8.1.7 126994,126995 1ycdA 243 37.43 2yw2A 424 38.06 1d2fA 390 38.55 c.67.1.3 34411 1amfA 233 39.42 c.94.1.1 35833 1mrzA 293 41.76 b.43.5.1,c.26.1.3 91452,91453 2irpA 208 41.88 1atgA 231 42.43 c.94.1.1 35834 2qj8A 332 42.50 1o2dA 371 42.54 e.22.1.2 86591 2j07A 420 42.59 a.99.1.1,c.28.1.1 137891,137892 2dr1A 386 42.92 2pe3A 354 43.11 1anf 370 43.23 1ja1A 622 43.93 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1omp 370 44.81 1tezA 474 44.83 a.99.1.1,c.28.1.1 112409,112410 1phpA 394 45.27 c.86.1.1 35452 2gh9A 386 45.45 1hp1A 516 45.85 d.114.1.1,d.159.1.2 70976,70977 1hlgA 371 46.42 c.69.1.6 34656 1y4tA 322 46.80 c.94.1.1 116464 2yutA 207 47.43 2z7bA 270 49.05 1xhfA 123 50.77 c.23.1.1 122003 1p5dX 463 50.82 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1v9nA 360 51.38 2f1kA 279 52.06 a.100.1.12,c.2.1.6 132772,132773 2qh8A 302 52.38 1eyzA 392 52.40 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1ehiA 377 52.52 c.30.1.2,d.142.1.1 31716,41484 1ye8A 178 53.22 c.37.1.11 123010 1laxA 370 53.95 c.94.1.1 84576 2jejA 358 54.82 d.240.1.1,e.8.1.7 138284,138285 1dbwA 126 55.30 c.23.1.1 31095 1ad1A 266 55.46 c.1.21.1 29668 4eugA 229 55.91 c.18.1.1 31019 1amf 233 56.82 1ra0A 430 57.43 b.92.1.2,c.1.9.5 111756,111757 4mbp 370 57.71 3ce9A 354 57.75 1ad2A 228 58.45 e.24.1.1 43353 1uslA 170 58.50 c.121.1.1 99871 2gcgA 330 58.55 1k2yX 463 60.80 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1xc1A 309 61.37 c.94.1.1 109543 1jx4A 352 61.77 d.240.1.1,e.8.1.7 90378,90379 2nu8B 388 62.08 1u3dA 509 62.58 a.99.1.1,c.28.1.1 107638,107639 1z2iA 358 63.97 1tca 317 63.98 1wyuA 438 64.27 c.67.1.7 121452 1y56B 382 65.64 1pswA 348 66.26 c.87.1.7 88287 1xvxA 312 66.62 c.94.1.1 116097 2e7jA 371 66.68 2cunA 410 67.42 1xfoA 357 67.48 b.49.3.1,c.56.5.4 115265,115266 1wekA 217 68.07 c.129.1.1 114553 2yrrA 353 68.41 1gq6A 313 69.24 c.42.1.1 70341 1sbpA 310 70.69 c.94.1.1 35760 1o5kA 306 73.01 c.1.10.1 92504 3c3kA 285 73.15 2r91A 286 73.24 1y0yA 353 73.76 b.49.3.1,c.56.5.4 122514,122515 2fvgA 340 74.04 b.49.3.1,c.56.5.4 134201,134202 1kjqA 391 74.13 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1kgsA 225 74.19 a.4.6.1,c.23.1.1 68596,68597 1ob8A 135 75.41 c.52.1.18 111627 2a1rA 430 76.22 1u8sA 192 76.38 d.58.18.5,d.58.18.5 107737,107738 2z1mA 345 76.47 2o4cA 380 76.66 3ct9A 356 76.75 2nuwA 288 76.83 1muwA 386 78.84 c.1.15.3 79495 3c8uA 208 78.93 1lsuA 147 79.01 c.2.1.9 74250 2ojpA 292 79.33 2hxmA 223 79.40 c.18.1.1 136857 1fpzA 212 79.63 c.45.1.1 59976 2ppwA 216 80.42 2qt3A 403 81.06 1id1A 153 81.13 c.2.1.9 62286 1ys7A 233 81.89 a.4.6.1,c.23.1.1 123961,123962 1rhcA 330 82.13 c.1.16.3 97468 1cs1A 386 83.18 c.67.1.3 34399 2bdqA 224 83.28 1ho1A 242 84.13 c.1.24.1 61097 2nwhA 317 84.95 1f6yA 262 85.52 c.1.21.2 29673 3brqA 296 86.29 1j1nA 492 86.40 c.94.1.1 83978 1ta9A 450 86.51 1vh7A 265 86.63 c.1.2.1 100646 1wmsA 177 86.93 c.37.1.8 109414 2yvqA 143 87.43 1lehA 364 87.98 c.2.1.7,c.58.1.1 30268,33916 1ivnA 190 88.13 c.23.10.5 83719 1tqxA 227 88.76 c.1.2.2 112614 2ax4A 198 89.65