# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 4.34e-30 c.56.5.6 90921 1xovA 326 1.00e-26 b.34.11.4,c.56.5.6 122206,122207 1ujnA 348 0.5317 e.22.1.1 99460 2h0aA 276 0.5980 1cg2A 393 0.8171 c.56.5.4,d.58.19.1 33844,39360 2i87A 364 1.413 3bijA 285 1.709 1iowA 306 2.160 c.30.1.2,d.142.1.1 31713,41481 2rb7A 364 2.825 1jq5A 370 2.897 e.22.1.2 67084 2dpiA 420 4.569 d.240.1.1,e.8.1.7 131612,131613 1yloA 348 4.822 b.49.3.1,c.56.5.4 123659,123660 1vgyA 393 5.015 c.56.5.4,d.58.19.1 100620,100621 1yqeA 282 5.032 c.56.7.1 123879 2ef5A 290 5.214 1e4eA 343 6.483 c.30.1.2,d.142.1.1 59221,59222 1dnpA 471 6.538 a.99.1.1,c.28.1.1 18775,31630 1gsa 316 7.159 1eg5A 384 7.662 c.67.1.3 34429 1ukz 203 7.699 1mldA 314 7.725 c.2.1.5,d.162.1.1 30122,42089 2irpA 208 10.86 1vljA 407 11.72 e.22.1.2 108832 1nnfA 309 12.70 c.94.1.1 85903 1iow 306 13.68 1p5dX 463 13.76 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2qyvA 487 14.55 1g67A 225 14.58 c.1.3.1 60311 1k0wA 231 14.65 c.74.1.1 77220 1dv2A 452 14.85 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2odtX 328 15.24 3ce9A 354 15.46 2j0aA 280 15.46 1dv1A 449 15.49 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3ct9A 356 15.57 1fnoA 417 15.66 d.58.19.1,c.56.5.4 70145,75841 1vhoA 346 16.39 b.49.3.1,c.56.5.4 100694,100695 1y0yA 353 17.31 b.49.3.1,c.56.5.4 122514,122515 3cpxA 321 17.90 2pe3A 354 18.04 1uhvA 500 18.92 b.71.1.2,c.1.8.3 99402,99403 2q43A 418 19.01 c.56.5.4,d.58.19.1 139821,139822 1k2yX 463 19.02 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1ad2A 228 19.43 e.24.1.1 43353 2fvgA 340 19.91 b.49.3.1,c.56.5.4 134201,134202 1ye8A 178 20.44 c.37.1.11 123010 1ccwA 137 20.90 c.23.6.1 31238 2yrrA 353 21.22 2vguA 407 21.66 1ytvA 366 23.31 c.94.1.1 124016 2r78A 117 25.62 2fuvA 549 25.72 1wqaA 455 25.95 1vheA 373 26.07 b.49.3.1,c.56.5.4 100669,100670 2viaA 405 26.38 1o5kA 306 28.20 c.1.10.1 92504 1hi9A 274 28.64 c.99.1.1 61063 4xis 387 28.77 2f7lA 455 28.96 2z7bA 270 29.48 2alzA 390 29.67 d.240.1.1,e.8.1.7 126994,126995 1rrmA 386 30.95 e.22.1.2 105081 2ayyA 121 31.37 c.23.1.6 127576 1xjcA 169 32.04 c.37.1.10 115387 3c3kA 285 32.55 4eugA 229 32.91 c.18.1.1 31019 1byi 224 33.29 1ta9A 450 33.64 1byiA 224 34.83 c.37.1.10 32199 1c0pA 363 35.43 c.4.1.2,d.16.1.3 30647,37934 1ra0A 430 35.50 b.92.1.2,c.1.9.5 111756,111757 1tca 317 36.12 3xis 387 36.25 2q7dA 346 36.33 1muwA 386 37.18 c.1.15.3 79495 2yutA 207 37.77 1ehiA 377 41.00 c.30.1.2,d.142.1.1 31716,41484 2id1A 130 41.59 2qh8A 302 41.69 2opiA 212 42.20 1dhpA 292 42.25 c.1.10.1 29097 2hjpA 290 42.78 2r91A 286 42.97 1kjnA 157 43.21 c.115.1.1 72614 2z06A 252 43.83 3b2yA 275 44.74 1xc1A 309 46.78 c.94.1.1 109543 1tuoA 464 48.50 1cs1A 386 50.16 c.67.1.3 34399 1gsaA 316 50.27 c.30.1.3,d.142.1.1 31718,41477 1xfoA 357 50.32 b.49.3.1,c.56.5.4 115265,115266 1tkjA 284 50.47 c.56.5.4 119296 2hxmA 223 50.81 c.18.1.1 136857 2dr1A 386 51.05 1e4cP 215 51.08 c.74.1.1 34969 1g3qA 237 51.19 c.37.1.10 60237 2f1kA 279 51.19 a.100.1.12,c.2.1.6 132772,132773 2pcqA 283 51.28 1tfuA 157 51.68 c.26.1.3 106859 2ax4A 198 52.20 1hdoA 206 52.25 c.2.1.2 60965 2z1mA 345 52.82 2hneA 436 54.20 2booA 247 54.68 2nuwA 288 55.80 2rghA 571 56.29 2eenA 183 56.66 1gq6A 313 57.15 c.42.1.1 70341 2o5aA 125 57.22 1x31B 404 57.40 1uslA 170 58.18 c.121.1.1 99871 1laxA 370 59.09 c.94.1.1 84576 1o2dA 371 59.48 e.22.1.2 86591 2eayA 233 59.55 1zbfA 142 60.45 c.55.3.1 124850 2asfA 137 61.71 b.45.1.1 127253 1tezA 474 61.78 a.99.1.1,c.28.1.1 112409,112410 1o1xA 155 62.00 c.121.1.1 86553 3cetA 334 62.39 3brqA 296 62.82 1anf 370 63.00 1id1A 153 63.65 c.2.1.9 62286 2a5lA 200 64.03 c.23.5.8 126176 1mrp 309 64.76 2o4cA 380 65.98 2gh9A 386 66.18 2j44A 217 67.52 1nal1 297 68.06 2iuyA 342 68.61 1lehA 364 69.56 c.2.1.7,c.58.1.1 30268,33916 1uc8A 280 69.64 c.30.1.6,d.142.1.7 99165,99166 2ehhA 294 69.70 3c5vA 316 70.27 1ng4A 390 71.27 c.3.1.2,d.16.1.3 85666,85667 1hl2A 297 71.34 c.1.10.1 83581 1xkyA 301 71.46 c.1.10.1 122094 1mrzA 293 71.77 b.43.5.1,c.26.1.3 91452,91453 1v9nA 360 72.91 1auk 489 73.25 3b4uA 294 73.47 2bjvA 265 73.81 2qv5A 261 74.07 2rfgA 297 75.53 2a6nA 292 76.51 c.1.10.1 126289 1p0kA 349 76.63 c.1.4.1 87648 2cukA 311 77.15 1omp 370 78.04 2a6lA 292 78.13 c.1.10.1 126285 2jejA 358 78.27 d.240.1.1,e.8.1.7 138284,138285 2ghaA 382 78.28 2yw2A 424 78.79 1hlgA 371 79.73 c.69.1.6 34656 1yeyA 444 81.27 c.1.11.2,d.54.1.1 116664,116665 2dc4A 165 82.87 1y60A 169 83.10 d.14.1.12 116489 1bx4A 345 83.73 c.72.1.1 34935 1p3wA 404 83.83 c.67.1.3 87752 2bv9A 290 83.93 c.1.8.3 129242 2yxbA 161 84.13 2fncA 381 84.73 1mkiA 330 84.75 e.3.1.2 84994 1sbp 310 84.77 2a67A 167 84.79 1wuaA 375 84.97 c.55.1.1,c.55.1.1 121281,121282 2ojpA 292 85.23 2nu8B 388 85.25 1jx4A 352 85.99 d.240.1.1,e.8.1.7 90378,90379 1np6A 174 86.78 c.37.1.10 85954 1ys7A 233 86.84 a.4.6.1,c.23.1.1 123961,123962 1qq9A 284 86.88 c.56.5.4 33841 2o20A 332 86.98 1sbpA 310 87.56 c.94.1.1 35760 1f74A 293 87.75 c.1.10.1 29079 2a0mA 316 88.66 c.42.1.1 125960 1u8sA 192 88.78 d.58.18.5,d.58.18.5 107737,107738 1lssA 140 89.30 c.2.1.9 74246 1z2iA 358 89.94