# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.37e-29 c.56.5.6 90921 1xovA 326 7.00e-26 b.34.11.4,c.56.5.6 122206,122207 1ujnA 348 0.4545 e.22.1.1 99460 2h0aA 276 0.8101 1cg2A 393 1.032 c.56.5.4,d.58.19.1 33844,39360 3bijA 285 1.166 1jq5A 370 1.385 e.22.1.2 67084 2rb7A 364 1.827 2i87A 364 2.208 1iowA 306 3.629 c.30.1.2,d.142.1.1 31713,41481 1yloA 348 3.974 b.49.3.1,c.56.5.4 123659,123660 1vgyA 393 4.828 c.56.5.4,d.58.19.1 100620,100621 2ef5A 290 5.281 3ce9A 354 5.452 3cpxA 321 6.150 1gsa 316 6.268 1e4eA 343 6.775 c.30.1.2,d.142.1.1 59221,59222 1yqeA 282 7.087 c.56.7.1 123879 1dnpA 471 7.184 a.99.1.1,c.28.1.1 18775,31630 2dpiA 420 7.217 d.240.1.1,e.8.1.7 131612,131613 1vhoA 346 7.900 b.49.3.1,c.56.5.4 100694,100695 1vljA 407 8.092 e.22.1.2 108832 1eg5A 384 8.748 c.67.1.3 34429 1y0yA 353 8.907 b.49.3.1,c.56.5.4 122514,122515 2pe3A 354 9.480 1ukz 203 9.824 1mldA 314 10.11 c.2.1.5,d.162.1.1 30122,42089 1g67A 225 10.85 c.1.3.1 60311 1dv1A 449 10.99 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3ct9A 356 11.66 1ta9A 450 13.18 1p5dX 463 14.57 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1dv2A 452 15.65 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1nnfA 309 17.01 c.94.1.1 85903 2z06A 252 17.77 1vheA 373 18.46 b.49.3.1,c.56.5.4 100669,100670 1ccwA 137 18.64 c.23.6.1 31238 2yrrA 353 18.94 1ye8A 178 19.20 c.37.1.11 123010 1uhvA 500 19.27 b.71.1.2,c.1.8.3 99402,99403 1rrmA 386 20.26 e.22.1.2 105081 2fvgA 340 20.97 b.49.3.1,c.56.5.4 134201,134202 2fuvA 549 21.02 1k2yX 463 21.12 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1o5kA 306 21.19 c.1.10.1 92504 1iow 306 22.00 2j0aA 280 22.71 1hi9A 274 23.49 c.99.1.1 61063 1fnoA 417 25.01 d.58.19.1,c.56.5.4 70145,75841 2yutA 207 25.84 1tuoA 464 26.01 1xfoA 357 27.00 b.49.3.1,c.56.5.4 115265,115266 2odtX 328 27.39 2hjpA 290 27.64 2q43A 418 27.82 c.56.5.4,d.58.19.1 139821,139822 2alzA 390 27.96 d.240.1.1,e.8.1.7 126994,126995 4xis 387 29.36 2qyvA 487 29.47 1gsaA 316 30.32 c.30.1.3,d.142.1.1 31718,41477 2irpA 208 30.53 1ra0A 430 30.93 b.92.1.2,c.1.9.5 111756,111757 1ytvA 366 31.59 c.94.1.1 124016 4eugA 229 31.92 c.18.1.1 31019 1wqaA 455 32.50 1byiA 224 33.25 c.37.1.10 32199 1byi 224 33.53 2f7lA 455 33.55 3xis 387 33.71 2r91A 286 34.01 1tca 317 34.40 1k0wA 231 35.07 c.74.1.1 77220 1xjcA 169 35.22 c.37.1.10 115387 2vguA 407 35.76 1x31B 404 36.14 1tkjA 284 37.08 c.56.5.4 119296 1kjnA 157 37.41 c.115.1.1 72614 3c3kA 285 37.94 2viaA 405 39.24 1muwA 386 40.04 c.1.15.3 79495 2dr1A 386 40.66 1g3qA 237 42.03 c.37.1.10 60237 3cyjA 372 42.04 2qh8A 302 42.40 1auk 489 43.85 1gq6A 313 44.33 c.42.1.1 70341 1dhpA 292 44.73 c.1.10.1 29097 1o2dA 371 44.85 e.22.1.2 86591 1pswA 348 45.42 c.87.1.7 88287 1ad2A 228 45.80 e.24.1.1 43353 2z1mA 345 45.87 1c0pA 363 45.91 c.4.1.2,d.16.1.3 30647,37934 1ehiA 377 46.38 c.30.1.2,d.142.1.1 31716,41484 2iuyA 342 47.15 2ehhA 294 47.31 2qv5A 261 47.91 1p0kA 349 48.14 c.1.4.1 87648 3brqA 296 48.17 2ayyA 121 48.25 c.23.1.6 127576 2booA 247 48.26 3b4uA 294 48.60 2hxmA 223 48.66 c.18.1.1 136857 2pcqA 283 50.47 1uslA 170 50.49 c.121.1.1 99871 1ys7A 233 51.47 a.4.6.1,c.23.1.1 123961,123962 1ng4A 390 53.45 c.3.1.2,d.16.1.3 85666,85667 2rfgA 297 53.65 1o1xA 155 54.09 c.121.1.1 86553 1j2rA 199 54.76 c.33.1.3 90788 1oc7A 364 54.97 c.6.1.1 86794 1id1A 153 55.50 c.2.1.9 62286 1kq3A 376 55.88 e.22.1.2 68790 1ycdA 243 58.21 1cs1A 386 58.90 c.67.1.3 34399 2bv9A 290 59.29 c.1.8.3 129242 1eceA 358 60.18 c.1.8.3 28813 2nuwA 288 61.21 2bjvA 265 61.25 2id1A 130 61.35 3c5vA 316 61.43 1hdoA 206 61.57 c.2.1.2 60965 2ojpA 292 61.74 2f1kA 279 62.97 a.100.1.12,c.2.1.6 132772,132773 2a6nA 292 63.31 c.1.10.1 126289 2ax4A 198 64.01 1tfuA 157 64.30 c.26.1.3 106859 2o4cA 380 65.06 3b2yA 275 65.82 1el5A 389 67.05 c.3.1.2,d.16.1.3 30369,37937 2hneA 436 67.13 1zbfA 142 67.25 c.55.3.1 124850 2q7dA 346 67.33 2a6lA 292 68.15 c.1.10.1 126285 2v3gA 283 68.86 2yxbA 161 69.40 1xc1A 309 69.63 c.94.1.1 109543 1udhA 244 69.70 c.18.1.1 31015 1xkyA 301 69.81 c.1.10.1 122094 2acaA 189 70.37 d.63.1.2 126545 2z7bA 270 70.62 2o3aA 178 72.10 1sbpA 310 72.59 c.94.1.1 35760 1uc8A 280 74.48 c.30.1.6,d.142.1.7 99165,99166 1amfA 233 75.00 c.94.1.1 35833 2o1sA 621 75.22 1qq9A 284 75.94 c.56.5.4 33841 2eenA 183 76.03 2j44A 217 76.12 1bx4A 345 76.15 c.72.1.1 34935 2aebA 322 76.89 c.42.1.1 126617 1laxA 370 76.93 c.94.1.1 84576 2a0mA 316 77.07 c.42.1.1 125960 1mrzA 293 77.16 b.43.5.1,c.26.1.3 91452,91453 1sbp 310 77.20 1tezA 474 77.65 a.99.1.1,c.28.1.1 112409,112410 2p97A 201 78.94 2cukA 311 79.78 1hlgA 371 80.11 c.69.1.6 34656 2r78A 117 80.21 1nal1 297 80.91 1f74A 293 81.72 c.1.10.1 29079 2a5lA 200 81.81 c.23.5.8 126176 2dc4A 165 83.01 2q4zA 312 83.71 1hyhA 309 83.89 c.2.1.5,d.162.1.1 30150,42117 2gh9A 386 84.00 2b4yA 271 85.00 c.31.1.5 127868 3bh0A 315 85.14 1j8fA 323 86.02 c.31.1.5 62738 2rghA 571 86.19 1anf 370 86.55 1hp1A 516 87.48 d.114.1.1,d.159.1.2 70976,70977 1hl2A 297 88.81 c.1.10.1 83581 2jejA 358 88.97 d.240.1.1,e.8.1.7 138284,138285 2a67A 167 89.36