# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 5.41e-27 c.56.5.6 90921 1xovA 326 4.88e-24 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.1909 2rb7A 364 0.8250 1iowA 306 1.000 c.30.1.2,d.142.1.1 31713,41481 2h0aA 276 1.053 3cpxA 321 1.941 1yloA 348 2.622 b.49.3.1,c.56.5.4 123659,123660 1ccwA 137 3.214 c.23.6.1 31238 1vljA 407 3.315 e.22.1.2 108832 2yxbA 161 4.098 1fnoA 417 4.851 d.58.19.1,c.56.5.4 70145,75841 1vgyA 393 5.618 c.56.5.4,d.58.19.1 100620,100621 1e4eA 343 5.747 c.30.1.2,d.142.1.1 59221,59222 2eklA 313 5.749 2pe3A 354 6.068 1gsa 316 6.430 2dpiA 420 6.474 d.240.1.1,e.8.1.7 131612,131613 1kjnA 157 6.916 c.115.1.1 72614 1cg2A 393 7.514 c.56.5.4,d.58.19.1 33844,39360 1rrmA 386 8.032 e.22.1.2 105081 2cukA 311 8.132 2ax4A 198 8.568 2fvgA 340 9.306 b.49.3.1,c.56.5.4 134201,134202 2oztA 332 10.53 2ef5A 290 10.74 1iow 306 11.36 1vhoA 346 12.13 b.49.3.1,c.56.5.4 100694,100695 1np6A 174 13.33 c.37.1.10 85954 2qs9A 194 15.24 2g76A 335 16.04 2qh8A 302 16.59 3c3kA 285 17.08 2yutA 207 17.25 1dv1A 449 17.46 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2i87A 364 17.94 1xfoA 357 18.25 b.49.3.1,c.56.5.4 115265,115266 2alzA 390 21.04 d.240.1.1,e.8.1.7 126994,126995 2odtX 328 21.29 2q43A 418 21.47 c.56.5.4,d.58.19.1 139821,139822 2o20A 332 21.68 1xklA 273 23.07 c.69.1.20 115410 1o1xA 155 23.38 c.121.1.1 86553 1vecA 206 24.09 c.37.1.19 100575 2gcgA 330 24.64 3ce9A 354 27.18 3xis 387 28.30 2o4cA 380 28.42 1b1cA 181 30.25 c.23.5.2 31212 1ycdA 243 31.49 1wcwA 261 31.82 1qycA 308 34.46 c.2.1.2 96581 1g67A 225 34.88 c.1.3.1 60311 1dnpA 471 36.51 a.99.1.1,c.28.1.1 18775,31630 3brqA 296 36.99 1c0pA 363 37.00 c.4.1.2,d.16.1.3 30647,37934 1uslA 170 37.73 c.121.1.1 99871 1y0yA 353 38.79 b.49.3.1,c.56.5.4 122514,122515 1uc8A 280 39.52 c.30.1.6,d.142.1.7 99165,99166 2z67A 456 39.79 2fcjA 119 39.99 c.136.1.1 133269 1xjo 284 40.75 1o2dA 371 40.80 e.22.1.2 86591 2yrrA 353 41.09 1gsaA 316 41.91 c.30.1.3,d.142.1.1 31718,41477 2yvqA 143 42.15 1yasA 257 43.43 c.69.1.20 34801 1qq9A 284 43.70 c.56.5.4 33841 1uhvA 500 44.32 b.71.1.2,c.1.8.3 99402,99403 2driA 271 44.71 c.93.1.1 35637 1ta9A 450 45.07 1eyzA 392 45.50 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2gmnA 274 48.25 2i9iA 254 48.68 4xis 387 49.37 1vd5A 377 50.73 a.102.1.7 108518 1uxoA 192 51.21 c.69.1.31 108121 3ct9A 356 51.41 1atgA 231 52.45 c.94.1.1 35834 1u0tA 307 54.85 e.52.1.1 107567 1z2lA 423 55.16 c.56.5.4,d.58.19.1 124383,124384 1flcA 432 55.46 b.19.1.3,c.23.10.2 23837,31337 1vmeA 410 55.97 c.23.5.1,d.157.1.3 108893,108894 1nksA 194 56.87 c.37.1.1 31886 1tkjA 284 56.95 c.56.5.4 119296 1o5kA 306 57.13 c.1.10.1 92504 1a88A 275 57.59 c.69.1.12 34707 1ra0A 430 58.57 b.92.1.2,c.1.9.5 111756,111757 2fvkA 559 59.42 b.92.1.3,c.1.9.6 134204,134205 2rghA 571 60.05 1oj7A 408 61.24 e.22.1.2 103971 2rfgA 297 61.64 2ar9A 278 61.87 1dhpA 292 62.12 c.1.10.1 29097 1jq5A 370 62.22 e.22.1.2 67084 3cyjA 372 62.89 1lokA 291 63.54 c.56.5.4 78122 1s8nA 205 63.87 c.23.1.1 105374 2aebA 322 64.74 c.42.1.1 126617 2j44A 217 66.61 1muwA 386 70.53 c.1.15.3 79495 1sg0A 230 70.86 c.23.5.3 118955 2qu7A 288 71.87 1w25A 459 72.35 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2a6nA 292 72.56 c.1.10.1 126289 1dv2A 452 73.36 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2ehhA 294 73.40 2nuwA 288 73.75 1tqhA 247 73.89 c.69.1.29 107225 1xjcA 169 74.57 c.37.1.10 115387 2pezA 179 74.61 1yzfA 195 77.23 c.23.10.5 124275 2hqbA 296 77.29 3bdvA 191 77.32 1sazA 381 77.99 c.55.1.2,c.55.1.2 118925,118926 1u2eA 289 78.28 2z1mA 345 78.33 2nu8B 388 78.56 2dc4A 165 78.85 2d5vA 164 80.05 1f0kA 364 81.24 c.87.1.2 35465 1gdhA 320 81.27 c.2.1.4,c.23.12.1 30095,31355 2a6lA 292 81.64 c.1.10.1 126285 1cs1A 386 82.08 c.67.1.3 34399 2ioyA 283 83.65 2bv9A 290 83.80 c.1.8.3 129242 1a0dA 440 84.14 c.1.15.3 29533 1wohA 305 84.20 c.42.1.1 109446 1ru8A 232 84.92 c.26.2.1 97849 1r1dA 247 85.89 c.69.1.29 96813 1ede 310 88.26 1xkyA 301 88.61 c.1.10.1 122094 1rtqA 299 89.95 c.56.5.4 97819