# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.65e-23 c.56.5.6 90921 1xovA 326 5.87e-20 b.34.11.4,c.56.5.6 122206,122207 2i87A 364 1.674 1o7tA 309 1.898 c.94.1.1 86645 1cs1A 386 3.044 c.67.1.3 34399 2dr1A 386 4.212 3bijA 285 4.299 4xis 387 4.330 1eg5A 384 4.452 c.67.1.3 34429 1o12A 376 4.678 b.92.1.5,c.1.9.10 80758,80759 3bh1A 507 5.292 1x7yA 400 5.991 c.36.1.11 114944 1xfoA 357 6.250 b.49.3.1,c.56.5.4 115265,115266 1k0wA 231 7.121 c.74.1.1 77220 1xc1A 309 7.236 c.94.1.1 109543 2h0aA 276 7.259 1ta9A 450 7.645 1qwgA 251 8.851 c.1.27.1 96473 1p1mA 406 8.919 b.92.1.4,c.1.9.9 87696,87697 1jx4A 352 9.046 d.240.1.1,e.8.1.7 90378,90379 1wyuA 438 9.065 c.67.1.7 121452 1yloA 348 9.577 b.49.3.1,c.56.5.4 123659,123660 2pgeA 377 10.19 1gsa 316 10.49 3xis 387 11.40 1uhvA 500 12.13 b.71.1.2,c.1.8.3 99402,99403 1e4eA 343 13.74 c.30.1.2,d.142.1.1 59221,59222 1muwA 386 14.50 c.1.15.3 79495 1kdgA 546 15.55 c.3.1.2,d.16.1.1 77337,77338 1vhoA 346 15.60 b.49.3.1,c.56.5.4 100694,100695 1rqbA 539 16.50 a.5.7.2,c.1.10.5 105057,105058 2hjpA 290 16.71 2viaA 405 18.41 1vheA 373 19.12 b.49.3.1,c.56.5.4 100669,100670 2q7dA 346 19.61 1auk 489 19.82 2bs9A 503 20.86 b.71.1.2,c.1.8.3 129062,129063 2z1qA 577 21.22 1ad1A 266 21.42 c.1.21.1 29668 2zivB 351 22.76 2odtX 328 23.43 1iowA 306 24.69 c.30.1.2,d.142.1.1 31713,41481 2v8hA 474 25.63 2z7bA 270 27.35 1iow 306 28.04 1amp 291 28.17 2o1sA 621 28.69 1dv1A 449 29.20 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1gq6A 313 32.38 c.42.1.1 70341 1xkyA 301 33.00 c.1.10.1 122094 1g67A 225 33.32 c.1.3.1 60311 1byiA 224 34.44 c.37.1.10 32199 1id1A 153 34.67 c.2.1.9 62286 3ce9A 354 34.68 1ccwA 137 34.75 c.23.6.1 31238 2i9iA 254 34.81 1uc8A 280 35.11 c.30.1.6,d.142.1.7 99165,99166 1oywA 523 36.09 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wohA 305 37.06 c.42.1.1 109446 1vljA 407 37.19 e.22.1.2 108832 1lt8A 406 37.77 c.1.26.1 78186 2iuyA 342 39.12 2ef5A 290 39.56 1g3qA 237 41.46 c.37.1.10 60237 2gu2A 312 41.93 1ps9A 671 42.08 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2pcqA 283 42.91 1jq5A 370 43.14 e.22.1.2 67084 1byi 224 43.49 1cs0A 1073 44.31 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1ehiA 377 44.73 c.30.1.2,d.142.1.1 31716,41484 2a84A 300 44.77 c.26.1.4 126389 1l5oA 356 45.03 c.39.1.1 77711 1q7zA 566 45.42 c.1.21.2,c.1.26.1 96090,96091 2e3jA 356 45.54 2dpiA 420 46.05 d.240.1.1,e.8.1.7 131612,131613 1sw5B 275 46.32 c.94.1.1 106070 2aebA 322 47.30 c.42.1.1 126617 1d3vA 323 47.32 c.42.1.1 32559 2vguA 407 48.27 2eq5A 228 48.43 1e4cP 215 49.60 c.74.1.1 34969 2eb0A 307 49.79 1k20A 310 51.12 c.107.1.1 68027 2jfnA 285 52.59 1lucB 324 54.07 c.1.16.1 29548 1gsaA 316 56.92 c.30.1.3,d.142.1.1 31718,41477 2b5tI 432 57.10 e.1.1.1 127905 2yrrA 353 57.11 3b4uA 294 57.45 1k8tA 510 58.63 e.41.1.1 68316 1sw2A 275 61.64 c.94.1.1 106064 1bx4A 345 61.66 c.72.1.1 34935 2z06A 252 62.85 2bfgA 503 64.13 b.71.1.2,c.1.8.3 128423,128424 1kwmA 402 65.09 c.56.5.1,d.58.3.1 73079,73080 1yadA 221 65.14 2o3aA 178 66.12 3cpxA 321 67.04 2b81A 323 67.58 1qnf 484 67.58 2fvgA 340 68.36 b.49.3.1,c.56.5.4 134201,134202 2qj8A 332 68.71 1xhcA 367 69.60 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1rm6A 769 72.42 d.41.1.1,d.133.1.1 111872,111873 3cniA 156 72.58 2fp4B 395 72.66 c.23.4.1,d.142.1.4 133897,133898 2ax4A 198 72.97 1o5kA 306 73.17 c.1.10.1 92504 2rb7A 364 73.33 2pgnA 589 74.36 1e9lA 377 74.61 c.1.8.5,d.26.3.1 59395,59396 2cw6A 298 74.74 2r78A 117 75.24 2yutA 207 76.55 2r91A 286 76.76 1v1rA 400 77.00 c.36.1.11 108272 1yp2A 451 77.33 b.81.1.4,c.68.1.6 123798,123799 1ni4A 365 78.62 c.36.1.11 85728 1reqA 727 79.78 c.1.19.1,c.23.6.1 29620,31247 2r98A 456 80.18 1kjnA 157 80.30 c.115.1.1 72614 1gsoA 431 81.12 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2v3gA 283 81.88 1q0rA 298 83.11 c.69.1.28 95508 2rebA 352 84.16 c.37.1.11,d.48.1.1 32282,38767 1mldA 314 84.32 c.2.1.5,d.162.1.1 30122,42089 2dc4A 165 84.38 2qh8A 302 85.04 1nbwA 607 85.42 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2bcoA 350 85.57 c.56.5.7 128302 1u3dA 509 85.82 a.99.1.1,c.28.1.1 107638,107639 2j0aA 280 87.69