# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 6.09e-31 c.56.5.6 90921 1xovA 326 7.16e-27 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.3587 2h0aA 276 0.4216 2i87A 364 1.583 1iowA 306 1.956 c.30.1.2,d.142.1.1 31713,41481 1gsa 316 1.973 1jq5A 370 2.112 e.22.1.2 67084 3cpxA 321 2.626 1ujnA 348 2.862 e.22.1.1 99460 2ef5A 290 2.919 1e4eA 343 4.362 c.30.1.2,d.142.1.1 59221,59222 1cg2A 393 4.570 c.56.5.4,d.58.19.1 33844,39360 1yloA 348 6.772 b.49.3.1,c.56.5.4 123659,123660 3ce9A 354 6.912 2odtX 328 7.260 1dv1A 449 8.988 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1g67A 225 9.896 c.1.3.1 60311 1ccwA 137 10.76 c.23.6.1 31238 1yqeA 282 11.20 c.56.7.1 123879 1muwA 386 11.23 c.1.15.3 79495 1vgyA 393 11.27 c.56.5.4,d.58.19.1 100620,100621 2rb7A 364 11.81 1vljA 407 12.35 e.22.1.2 108832 3cyjA 372 13.18 1byiA 224 13.87 c.37.1.10 32199 2yutA 207 14.12 2a0mA 316 14.16 c.42.1.1 125960 2dpiA 420 14.72 d.240.1.1,e.8.1.7 131612,131613 1iow 306 14.80 1vhoA 346 14.96 b.49.3.1,c.56.5.4 100694,100695 2rghA 571 15.28 1cs1A 386 15.47 c.67.1.3 34399 1g3qA 237 16.96 c.37.1.10 60237 2bv9A 290 17.17 c.1.8.3 129242 1dnpA 471 17.55 a.99.1.1,c.28.1.1 18775,31630 3xis 387 17.75 1gsaA 316 18.28 c.30.1.3,d.142.1.1 31718,41477 2r91A 286 18.36 2o3aA 178 18.38 1mldA 314 18.46 c.2.1.5,d.162.1.1 30122,42089 4xis 387 19.20 2vguA 407 19.82 2q7dA 346 19.91 2dr1A 386 20.04 2fvgA 340 20.74 b.49.3.1,c.56.5.4 134201,134202 1mrzA 293 21.15 b.43.5.1,c.26.1.3 91452,91453 1k0wA 231 21.61 c.74.1.1 77220 1ye8A 178 21.94 c.37.1.11 123010 1o5kA 306 22.57 c.1.10.1 92504 1yadA 221 22.87 1hyhA 309 23.29 c.2.1.5,d.162.1.1 30150,42117 2viaA 405 24.12 1c0pA 363 24.30 c.4.1.2,d.16.1.3 30647,37934 1nnfA 309 24.45 c.94.1.1 85903 2fuvA 549 27.27 1k2yX 463 27.53 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1tuoA 464 27.94 2q43A 418 28.02 c.56.5.4,d.58.19.1 139821,139822 2hjpA 290 28.20 2nuwA 288 29.50 2ax4A 198 29.63 1ad4A 266 30.01 c.1.21.1 29670 3c3kA 285 30.43 1y0yA 353 30.81 b.49.3.1,c.56.5.4 122514,122515 1rrmA 386 30.85 e.22.1.2 105081 1auk 489 31.30 1byi 224 31.71 1fnoA 417 32.07 d.58.19.1,c.56.5.4 70145,75841 2bjvA 265 32.72 1p5dX 463 32.73 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2j0aA 280 32.78 2qyvA 487 33.26 2qt3A 403 33.42 1vheA 373 33.59 b.49.3.1,c.56.5.4 100669,100670 2z08A 137 33.71 2z1mA 345 33.97 1ukz 203 34.46 2j07A 420 35.28 a.99.1.1,c.28.1.1 137891,137892 2pfsA 150 35.47 1tca 317 36.67 1ta9A 450 37.02 1ra0A 430 37.08 b.92.1.2,c.1.9.5 111756,111757 1el5A 389 37.14 c.3.1.2,d.16.1.3 30369,37937 1o2dA 371 37.19 e.22.1.2 86591 2ehhA 294 37.19 2qh8A 302 37.42 1uc8A 280 37.45 c.30.1.6,d.142.1.7 99165,99166 1eg5A 384 37.89 c.67.1.3 34429 1pswA 348 39.00 c.87.1.7 88287 1ytvA 366 39.21 c.94.1.1 124016 1tfuA 157 40.40 c.26.1.3 106859 1wqaA 455 40.61 1kjnA 157 40.88 c.115.1.1 72614 2rfgA 297 41.06 1id1A 153 41.20 c.2.1.9 62286 1ad1A 266 41.21 c.1.21.1 29668 2pe3A 354 42.10 1uslA 170 42.55 c.121.1.1 99871 2aebA 322 42.69 c.42.1.1 126617 2pcqA 283 43.10 1xkyA 301 43.91 c.1.10.1 122094 2yrrA 353 44.06 1gq6A 313 44.67 c.42.1.1 70341 1uhvA 500 45.19 b.71.1.2,c.1.8.3 99402,99403 2cukA 311 46.31 2f7lA 455 47.64 2booA 247 48.46 2irpA 208 49.70 3b4uA 294 49.88 1dv2A 452 50.07 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1bx4A 345 50.27 c.72.1.1 34935 1ur5A 309 50.67 c.2.1.5,d.162.1.1 99807,99808 2yxbA 161 51.11 1f0kA 364 53.12 c.87.1.2 35465 1o1xA 155 53.59 c.121.1.1 86553 2f1kA 279 55.40 a.100.1.12,c.2.1.6 132772,132773 1hp1A 516 55.66 d.114.1.1,d.159.1.2 70976,70977 1laxA 370 59.53 c.94.1.1 84576 1bg6A 359 59.96 a.100.1.5,c.2.1.6 18810,30214 1ldg 316 60.12 1gudA 288 61.27 c.93.1.1 83326 1sbpA 310 61.44 c.94.1.1 35760 1qjcA 158 61.99 c.26.1.3 63328 1kq3A 376 63.09 e.22.1.2 68790 3brqA 296 64.51 1ja1A 622 64.89 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2hxmA 223 65.89 c.18.1.1 136857 1omp 370 65.94 2yvqA 143 68.00 1wjgA 137 69.45 c.26.2.4 114696 1sbp 310 71.40 1z2iA 358 72.15 1anf 370 72.82 2jmpA 107 74.77 2v3gA 283 74.83 1hdoA 206 75.06 c.2.1.2 60965 2fssA 365 75.90 1qz9A 416 76.11 c.67.1.3 96621 2z7bA 270 76.41 1np6A 174 76.68 c.37.1.10 85954 1hi9A 274 77.75 c.99.1.1 61063 2pr7A 137 77.96 1ehiA 377 78.87 c.30.1.2,d.142.1.1 31716,41484 1xfoA 357 79.47 b.49.3.1,c.56.5.4 115265,115266 1eyeA 280 79.51 c.1.21.1 29672 1zuwA 272 80.66 2z06A 252 80.73 2dc4A 165 81.59 1cs0A 1073 81.78 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2alzA 390 82.47 d.240.1.1,e.8.1.7 126994,126995 1t3iA 420 83.42 c.67.1.3 106354 1aj2A 282 83.80 c.1.21.1 29665 2r78A 117 83.94 1xjcA 169 84.52 c.37.1.10 115387 8abp 306 86.63 2yw2A 424 88.03 2hqbA 296 88.29 1va4A 279 88.30 c.69.1.12 108458 2qulA 290 88.57 1hl2A 297 88.79 c.1.10.1 83581 1f74A 293 88.82 c.1.10.1 29079 1p0kA 349 89.19 c.1.4.1 87648 1d3vA 323 89.56 c.42.1.1 32559