# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.39e-30 c.56.5.6 90921 1xovA 326 1.43e-26 b.34.11.4,c.56.5.6 122206,122207 2h0aA 276 0.8119 3bijA 285 1.041 1ujnA 348 1.816 e.22.1.1 99460 1e4eA 343 2.854 c.30.1.2,d.142.1.1 59221,59222 2i87A 364 2.992 1gsa 316 3.865 1iowA 306 4.616 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 4.859 e.22.1.2 67084 3ce9A 354 5.664 2dpiA 420 6.410 d.240.1.1,e.8.1.7 131612,131613 1yloA 348 7.236 b.49.3.1,c.56.5.4 123659,123660 1vljA 407 8.608 e.22.1.2 108832 3cpxA 321 8.715 1k0wA 231 10.20 c.74.1.1 77220 1dnpA 471 11.10 a.99.1.1,c.28.1.1 18775,31630 1g67A 225 11.40 c.1.3.1 60311 2odtX 328 11.68 1vhoA 346 12.81 b.49.3.1,c.56.5.4 100694,100695 2pe3A 354 13.85 2ef5A 290 14.20 1eg5A 384 16.02 c.67.1.3 34429 1ta9A 450 16.56 2f4qA 346 16.75 1dv2A 452 16.85 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1ccwA 137 17.14 c.23.6.1 31238 1y0yA 353 18.11 b.49.3.1,c.56.5.4 122514,122515 1rrmA 386 19.17 e.22.1.2 105081 1fuiA 591 19.37 b.43.2.1,c.85.1.1 25674,35444 1ra0A 430 19.80 b.92.1.2,c.1.9.5 111756,111757 1uhvA 500 21.19 b.71.1.2,c.1.8.3 99402,99403 1c0pA 363 22.15 c.4.1.2,d.16.1.3 30647,37934 1mldA 314 23.22 c.2.1.5,d.162.1.1 30122,42089 1jx4A 352 23.59 d.240.1.1,e.8.1.7 90378,90379 1cg2A 393 24.22 c.56.5.4,d.58.19.1 33844,39360 1yqeA 282 25.64 c.56.7.1 123879 1nnfA 309 26.08 c.94.1.1 85903 1nb9A 147 26.19 b.43.5.1 85515 1muwA 386 26.65 c.1.15.3 79495 1dv1A 449 26.81 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1vgyA 393 27.67 c.56.5.4,d.58.19.1 100620,100621 1o5kA 306 28.45 c.1.10.1 92504 1hi9A 274 28.85 c.99.1.1 61063 2q7dA 346 29.27 2fvgA 340 29.36 b.49.3.1,c.56.5.4 134201,134202 2r91A 286 29.55 2yrrA 353 29.65 2dr1A 386 29.90 2irpA 208 30.14 2z7bA 270 30.40 2jejA 358 30.40 d.240.1.1,e.8.1.7 138284,138285 1xfoA 357 30.62 b.49.3.1,c.56.5.4 115265,115266 1fnoA 417 30.66 d.58.19.1,c.56.5.4 70145,75841 2rb7A 364 31.75 2a1rA 430 31.98 1gsaA 316 32.15 c.30.1.3,d.142.1.1 31718,41477 5reqA 727 32.81 c.1.19.1,c.23.6.1 29632,31259 1ad4A 266 32.94 c.1.21.1 29670 2j0aA 280 33.07 1tca 317 33.19 3b2yA 275 33.26 2nuwA 288 33.55 1tfuA 157 33.98 c.26.1.3 106859 1kq3A 376 34.38 e.22.1.2 68790 2booA 247 34.84 2rghA 571 34.93 1cs1A 386 37.12 c.67.1.3 34399 1o2dA 371 37.87 e.22.1.2 86591 1hyhA 309 38.64 c.2.1.5,d.162.1.1 30150,42117 2pcqA 283 39.38 1ehiA 377 41.38 c.30.1.2,d.142.1.1 31716,41484 2ayyA 121 41.89 c.23.1.6 127576 2hxmA 223 42.78 c.18.1.1 136857 1oj4A 283 43.31 d.14.1.5,d.58.26.5 93083,93084 2bv9A 290 43.50 c.1.8.3 129242 2r78A 117 43.75 2i5eA 211 44.48 2qt3A 403 44.85 1vheA 373 46.18 b.49.3.1,c.56.5.4 100669,100670 2qh8A 302 46.42 2z06A 252 48.00 2eayA 233 48.57 1e7lA 157 49.88 a.140.4.1,d.4.1.5 64728,64729 2ehhA 294 49.96 1byiA 224 50.57 c.37.1.10 32199 1ad2A 228 51.38 e.24.1.1 43353 1o12A 376 51.61 b.92.1.5,c.1.9.10 80758,80759 2fvkA 559 52.02 b.92.1.3,c.1.9.6 134204,134205 2q43A 418 52.52 c.56.5.4,d.58.19.1 139821,139822 2rfgA 297 54.07 2cukA 311 55.34 2bjvA 265 55.98 2ojpA 292 56.02 4eugA 229 56.24 c.18.1.1 31019 1ty9A 222 57.04 b.45.1.1 112827 1dhpA 292 57.18 c.1.10.1 29097 2vguA 407 59.46 2eenA 183 59.60 2acaA 189 59.93 d.63.1.2 126545 3cyjA 372 60.53 1xkyA 301 60.89 c.1.10.1 122094 2opiA 212 62.36 3c3kA 285 62.50 1xc1A 309 63.12 c.94.1.1 109543 3cdxA 354 63.22 2yutA 207 64.00 1anf 370 64.74 1hlgA 371 65.81 c.69.1.6 34656 1bx4A 345 66.75 c.72.1.1 34935 1gq6A 313 67.37 c.42.1.1 70341 2dc4A 165 67.56 2v3gA 283 67.89 2nu8B 388 68.93 1j8fA 323 69.26 c.31.1.5 62738 1lehA 364 69.71 c.2.1.7,c.58.1.1 30268,33916 2a6lA 292 70.05 c.1.10.1 126285 1ycdA 243 70.44 2jmpA 107 72.72 2fiuA 99 73.53 d.58.4.16 133537 1fpzA 212 74.33 c.45.1.1 59976 1byi 224 74.81 1y44A 320 75.06 d.157.1.7 122608 1mrp 309 75.25 2fssA 365 75.38 2alzA 390 76.08 d.240.1.1,e.8.1.7 126994,126995 3bh0A 315 77.25 2hjpA 290 78.23 1ye8A 178 78.27 c.37.1.11 123010 1uslA 170 78.34 c.121.1.1 99871 3xis 387 78.56 1nal1 297 78.83 2fuvA 549 79.10 1n08A 163 81.15 b.43.5.1 79730 2viaA 405 81.42 3b34A 891 81.82 1p5dX 463 82.08 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ytvA 366 83.19 c.94.1.1 124016 1qjcA 158 83.25 c.26.1.3 63328 1g3qA 237 84.30 c.37.1.10 60237 2q4zA 312 84.51 1yadA 221 85.06 2yxbA 161 85.98 2o3aA 178 86.32 2v9dA 343 87.03 2rauA 354 87.50 2a6nA 292 87.83 c.1.10.1 126289 1hl2A 297 88.58 c.1.10.1 83581 3b4uA 294 89.13 1np6A 174 89.38 c.37.1.10 85954 1p3y1 194 89.71