# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 8.27e-31 c.56.5.6 90921 1xovA 326 5.71e-27 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.7921 2h0aA 276 1.167 1gsa 316 2.165 1ujnA 348 2.440 e.22.1.1 99460 1iowA 306 2.469 c.30.1.2,d.142.1.1 31713,41481 2dpiA 420 2.704 d.240.1.1,e.8.1.7 131612,131613 1jq5A 370 3.392 e.22.1.2 67084 1dv1A 449 4.918 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2odtX 328 5.072 2i87A 364 5.399 1dv2A 452 5.780 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1yloA 348 6.265 b.49.3.1,c.56.5.4 123659,123660 1dnpA 471 6.348 a.99.1.1,c.28.1.1 18775,31630 2q7dA 346 6.671 1nnfA 309 7.361 c.94.1.1 85903 1vljA 407 7.873 e.22.1.2 108832 3cpxA 321 9.197 3ce9A 354 9.501 1cg2A 393 9.678 c.56.5.4,d.58.19.1 33844,39360 1g67A 225 11.82 c.1.3.1 60311 1rrmA 386 11.94 e.22.1.2 105081 1iow 306 12.30 1o5kA 306 13.32 c.1.10.1 92504 1vgyA 393 13.70 c.56.5.4,d.58.19.1 100620,100621 2ef5A 290 14.85 1k0wA 231 17.28 c.74.1.1 77220 2rb7A 364 17.65 1vhoA 346 19.01 b.49.3.1,c.56.5.4 100694,100695 2bjvA 265 20.38 1eg5A 384 20.43 c.67.1.3 34429 1ta9A 450 20.80 1mldA 314 20.83 c.2.1.5,d.162.1.1 30122,42089 1ytvA 366 20.97 c.94.1.1 124016 1byiA 224 21.14 c.37.1.10 32199 1byi 224 21.63 1e4eA 343 22.04 c.30.1.2,d.142.1.1 59221,59222 1anf 370 22.51 2pe3A 354 22.52 2fuvA 549 22.58 2j0aA 280 22.90 1fnoA 417 23.96 d.58.19.1,c.56.5.4 70145,75841 1g3qA 237 24.45 c.37.1.10 60237 1ccwA 137 24.99 c.23.6.1 31238 1gsaA 316 25.25 c.30.1.3,d.142.1.1 31718,41477 1x31B 404 26.07 2dr1A 386 26.65 2r91A 286 28.35 2cukA 311 28.81 1y0yA 353 30.26 b.49.3.1,c.56.5.4 122514,122515 2f4qA 346 31.13 1gq6A 313 32.71 c.42.1.1 70341 3c3kA 285 32.99 1omp 370 33.02 1tca 317 33.33 1xkyA 301 33.44 c.1.10.1 122094 1ja1A 622 33.53 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2qyvA 487 34.13 1nb9A 147 34.20 b.43.5.1 85515 1ra0A 430 34.21 b.92.1.2,c.1.9.5 111756,111757 1vheA 373 35.85 b.49.3.1,c.56.5.4 100669,100670 2hxmA 223 36.25 c.18.1.1 136857 1laxA 370 37.04 c.94.1.1 84576 2rfgA 297 37.30 2jejA 358 37.60 d.240.1.1,e.8.1.7 138284,138285 1oj4A 283 37.60 d.14.1.5,d.58.26.5 93083,93084 1xjcA 169 38.22 c.37.1.10 115387 2nuwA 288 38.33 1y4tA 322 38.47 c.94.1.1 116464 2qh8A 302 39.02 2ehhA 294 39.08 1xfoA 357 39.43 b.49.3.1,c.56.5.4 115265,115266 1v9nA 360 39.76 2alzA 390 40.16 d.240.1.1,e.8.1.7 126994,126995 1kq3A 376 40.37 e.22.1.2 68790 2yutA 207 40.55 1ad2A 228 41.78 e.24.1.1 43353 3ct9A 356 42.67 3cyjA 372 43.10 2fiuA 99 43.27 d.58.4.16 133537 1dhpA 292 43.71 c.1.10.1 29097 4eugA 229 44.07 c.18.1.1 31019 1f74A 293 44.72 c.1.10.1 29079 1lssA 140 45.38 c.2.1.9 74246 2o4cA 380 45.62 2fvgA 340 45.69 b.49.3.1,c.56.5.4 134201,134202 1ye8A 178 45.69 c.37.1.11 123010 1hl2A 297 45.74 c.1.10.1 83581 1yqeA 282 47.21 c.56.7.1 123879 1ycdA 243 47.94 1hlgA 371 48.68 c.69.1.6 34656 1uhvA 500 48.70 b.71.1.2,c.1.8.3 99402,99403 1jx4A 352 49.70 d.240.1.1,e.8.1.7 90378,90379 1cs1A 386 51.13 c.67.1.3 34399 1nal1 297 52.01 2q43A 418 52.29 c.56.5.4,d.58.19.1 139821,139822 2pcqA 283 53.47 1e7lA 157 53.95 a.140.4.1,d.4.1.5 64728,64729 2booA 247 54.64 1hyhA 309 54.72 c.2.1.5,d.162.1.1 30150,42117 1np6A 174 55.60 c.37.1.10 85954 4mbp 370 55.95 2j07A 420 56.90 a.99.1.1,c.28.1.1 137891,137892 2eenA 183 58.10 2bv9A 290 61.06 c.1.8.3 129242 1q35A 320 61.18 c.94.1.1 95661 3cetA 334 61.30 1hdoA 206 61.74 c.2.1.2 60965 2e7jA 371 61.94 1xc1A 309 62.21 c.94.1.1 109543 2f1kA 279 62.26 a.100.1.12,c.2.1.6 132772,132773 1tfuA 157 63.05 c.26.1.3 106859 1ukz 203 64.63 1wqaA 455 65.07 2o20A 332 66.09 2yxbA 161 66.45 1sbpA 310 67.13 c.94.1.1 35760 1t3iA 420 67.47 c.67.1.3 106354 1uslA 170 67.48 c.121.1.1 99871 1qk8A 146 67.49 c.47.1.10 33061 2r78A 117 67.95 2cp8A 54 68.53 a.5.2.1 130695 1hs6A 611 68.57 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 3b4uA 294 68.94 1lehA 364 69.36 c.2.1.7,c.58.1.1 30268,33916 1u3dA 509 70.32 a.99.1.1,c.28.1.1 107638,107639 5reqA 727 70.55 c.1.19.1,c.23.6.1 29632,31259 2rghA 571 72.34 1wcwA 261 74.60 2gh9A 386 76.94 1mrp 309 77.14 1muwA 386 77.66 c.1.15.3 79495 1uc8A 280 77.80 c.30.1.6,d.142.1.7 99165,99166 2yvqA 143 78.10 1xmxA 385 78.28 c.52.1.26 115568 1c0pA 363 79.53 c.4.1.2,d.16.1.3 30647,37934 2eayA 233 79.55 2a6nA 292 79.84 c.1.10.1 126289 2a6lA 292 80.89 c.1.10.1 126285 1z2iA 358 81.10 1xvxA 312 81.20 c.94.1.1 116097 1bg6A 359 81.43 a.100.1.5,c.2.1.6 18810,30214 2ojpA 292 81.72 1kjnA 157 81.76 c.115.1.1 72614 2z7bA 270 81.81 2a0mA 316 83.24 c.42.1.1 125960 2vguA 407 83.26 3brqA 296 84.08 2acaA 189 84.37 d.63.1.2 126545 2viaA 405 85.17 1o2dA 371 85.20 e.22.1.2 86591 1phpA 394 85.39 c.86.1.1 35452 1o1xA 155 85.68 c.121.1.1 86553 1sbp 310 86.12 1fpzA 212 87.17 c.45.1.1 59976 2o3aA 178 87.26 1ehiA 377 87.97 c.30.1.2,d.142.1.1 31716,41484 1tkjA 284 89.14 c.56.5.4 119296 2irpA 208 89.62