# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.66e-31 c.56.5.6 90921 1xovA 326 1.66e-27 b.34.11.4,c.56.5.6 122206,122207 2h0aA 276 0.3199 3bijA 285 0.5916 2dpiA 420 1.286 d.240.1.1,e.8.1.7 131612,131613 1ujnA 348 1.373 e.22.1.1 99460 1cg2A 393 2.443 c.56.5.4,d.58.19.1 33844,39360 1iowA 306 2.867 c.30.1.2,d.142.1.1 31713,41481 1gsa 316 3.884 1nnfA 309 4.988 c.94.1.1 85903 2i87A 364 5.014 2rb7A 364 5.108 1vgyA 393 5.190 c.56.5.4,d.58.19.1 100620,100621 1mldA 314 6.321 c.2.1.5,d.162.1.1 30122,42089 1jq5A 370 6.509 e.22.1.2 67084 2odtX 328 6.621 1yloA 348 6.923 b.49.3.1,c.56.5.4 123659,123660 2ef5A 290 7.117 1dnpA 471 7.364 a.99.1.1,c.28.1.1 18775,31630 1eg5A 384 8.661 c.67.1.3 34429 1dv1A 449 10.11 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1e4eA 343 10.71 c.30.1.2,d.142.1.1 59221,59222 1byiA 224 11.28 c.37.1.10 32199 1dv2A 452 14.34 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1g67A 225 14.37 c.1.3.1 60311 3cpxA 321 14.57 1uhvA 500 15.03 b.71.1.2,c.1.8.3 99402,99403 3ce9A 354 15.72 2bjvA 265 16.07 1byi 224 17.28 1fnoA 417 17.33 d.58.19.1,c.56.5.4 70145,75841 1vljA 407 17.73 e.22.1.2 108832 2alzA 390 19.26 d.240.1.1,e.8.1.7 126994,126995 1gq6A 313 20.15 c.42.1.1 70341 2q7dA 346 20.54 1ccwA 137 20.70 c.23.6.1 31238 1yqeA 282 20.95 c.56.7.1 123879 1vhoA 346 22.04 b.49.3.1,c.56.5.4 100694,100695 2f4qA 346 22.55 1k0wA 231 22.85 c.74.1.1 77220 1jx4A 352 23.23 d.240.1.1,e.8.1.7 90378,90379 1ytvA 366 23.76 c.94.1.1 124016 2fuvA 549 24.22 2jejA 358 24.72 d.240.1.1,e.8.1.7 138284,138285 1iow 306 25.18 1rrmA 386 26.95 e.22.1.2 105081 2q43A 418 27.14 c.56.5.4,d.58.19.1 139821,139822 1gsaA 316 29.28 c.30.1.3,d.142.1.1 31718,41477 2yxbA 161 29.39 2pe3A 354 30.61 2hxmA 223 30.62 c.18.1.1 136857 4eugA 229 30.67 c.18.1.1 31019 2booA 247 31.30 2rghA 571 32.51 1o5kA 306 32.98 c.1.10.1 92504 2dr1A 386 33.34 1g3qA 237 33.80 c.37.1.10 60237 3ct9A 356 34.56 1tca 317 34.94 1ad2A 228 35.10 e.24.1.1 43353 2qyvA 487 36.00 1anf 370 36.18 2j0aA 280 37.75 1ta9A 450 37.80 1dhpA 292 37.84 c.1.10.1 29097 1y0yA 353 37.90 b.49.3.1,c.56.5.4 122514,122515 1xjcA 169 38.41 c.37.1.10 115387 1ukz 203 38.53 2nuwA 288 38.98 1ra0A 430 40.18 b.92.1.2,c.1.9.5 111756,111757 2cukA 311 40.39 2yrrA 353 40.51 2r78A 117 40.55 2rfgA 297 41.18 1hlgA 371 41.98 c.69.1.6 34656 1omp 370 42.09 2yutA 207 42.11 3c3kA 285 42.33 2irpA 208 42.37 1np6A 174 42.89 c.37.1.10 85954 2z7bA 270 43.39 1kq3A 376 44.25 e.22.1.2 68790 1vheA 373 45.27 b.49.3.1,c.56.5.4 100669,100670 1kjnA 157 49.00 c.115.1.1 72614 1q35A 320 49.24 c.94.1.1 95661 1x31B 404 49.70 1hdoA 206 50.05 c.2.1.2 60965 1fpzA 212 50.19 c.45.1.1 59976 2f1kA 279 50.66 a.100.1.12,c.2.1.6 132772,132773 1hyhA 309 50.66 c.2.1.5,d.162.1.1 30150,42117 1tfuA 157 51.13 c.26.1.3 106859 2r91A 286 51.50 2acaA 189 51.69 d.63.1.2 126545 1xc1A 309 52.13 c.94.1.1 109543 1oj4A 283 52.14 d.14.1.5,d.58.26.5 93083,93084 1o7tA 309 53.39 c.94.1.1 86645 2a1rA 430 53.55 1c0pA 363 53.79 c.4.1.2,d.16.1.3 30647,37934 1o1xA 155 53.93 c.121.1.1 86553 1cs1A 386 54.38 c.67.1.3 34399 1p5dX 463 54.48 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1xvxA 312 54.63 c.94.1.1 116097 1muwA 386 54.84 c.1.15.3 79495 2ehhA 294 55.20 2j07A 420 55.92 a.99.1.1,c.28.1.1 137891,137892 2fvgA 340 56.34 b.49.3.1,c.56.5.4 134201,134202 1ja1A 622 57.27 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2fssA 365 57.42 1e7lA 157 57.71 a.140.4.1,d.4.1.5 64728,64729 1ycdA 243 58.26 2ojpA 292 59.36 1tuoA 464 60.14 2fiuA 99 60.62 d.58.4.16 133537 1wqaA 455 60.65 3ceuA 210 60.86 1laxA 370 61.08 c.94.1.1 84576 1uslA 170 61.87 c.121.1.1 99871 1uc8A 280 62.37 c.30.1.6,d.142.1.7 99165,99166 1o2dA 371 62.51 e.22.1.2 86591 1xfoA 357 62.62 b.49.3.1,c.56.5.4 115265,115266 2qh8A 302 62.74 3cetA 334 63.09 1k2yX 463 63.75 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1ehiA 377 64.15 c.30.1.2,d.142.1.1 31716,41484 1y44A 320 64.36 d.157.1.7 122608 1xkyA 301 64.68 c.1.10.1 122094 2eenA 183 64.83 1z2iA 358 65.33 3brqA 296 65.65 1amfA 233 68.20 c.94.1.1 35833 2a6nA 292 68.85 c.1.10.1 126289 2a6lA 292 68.91 c.1.10.1 126285 1hl2A 297 69.89 c.1.10.1 83581 2o4cA 380 71.01 2bv9A 290 71.56 c.1.8.3 129242 2ek8A 421 73.83 1y4tA 322 75.26 c.94.1.1 116464 2eayA 233 75.46 2pcqA 283 75.85 3xis 387 76.09 2qt3A 403 76.13 1wuaA 375 76.31 c.55.1.1,c.55.1.1 121281,121282 2gh9A 386 76.45 5reqA 727 77.25 c.1.19.1,c.23.6.1 29632,31259 1lssA 140 77.57 c.2.1.9 74246 1nal1 297 78.28 2a0mA 316 78.43 c.42.1.1 125960 1mrzA 293 78.97 b.43.5.1,c.26.1.3 91452,91453 4xis 387 78.97 8abp 306 78.99 1tkjA 284 79.81 c.56.5.4 119296 2jmpA 107 82.66 1sbpA 310 83.73 c.94.1.1 35760 3b4uA 294 84.33 2hneA 436 84.80 1ye8A 178 84.91 c.37.1.11 123010 2f7lA 455 85.16 1oroA 213 86.05 c.61.1.1 34093 1f74A 293 86.63 c.1.10.1 29079 1nb9A 147 87.10 b.43.5.1 85515 2e7jA 371 87.60 4mbp 370 88.48 3cyjA 372 89.82 1v9nA 360 89.90