# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 4.59e-26 c.56.5.6 90921 1xovA 326 4.44e-22 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.1619 2rb7A 364 1.621 1yloA 348 1.717 b.49.3.1,c.56.5.4 123659,123660 1hi9A 274 2.826 c.99.1.1 61063 3cpxA 321 3.312 1fnoA 417 3.880 d.58.19.1,c.56.5.4 70145,75841 2pe3A 354 4.749 1qq9A 284 4.956 c.56.5.4 33841 1xjo 284 5.453 1y0yA 353 5.909 b.49.3.1,c.56.5.4 122514,122515 2h0aA 276 6.025 1cg2A 393 6.097 c.56.5.4,d.58.19.1 33844,39360 2q43A 418 6.374 c.56.5.4,d.58.19.1 139821,139822 1xfoA 357 6.795 b.49.3.1,c.56.5.4 115265,115266 1tkjA 284 7.357 c.56.5.4 119296 2fvgA 340 9.821 b.49.3.1,c.56.5.4 134201,134202 4eugA 229 11.29 c.18.1.1 31019 1ccwA 137 11.72 c.23.6.1 31238 1dv1A 449 12.15 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2q4zA 312 12.19 1o1xA 155 12.78 c.121.1.1 86553 2booA 247 13.25 2qs9A 194 13.56 1vgyA 393 13.59 c.56.5.4,d.58.19.1 100620,100621 3bk2A 562 14.14 1f0kA 364 14.43 c.87.1.2 35465 1rrmA 386 14.80 e.22.1.2 105081 2ef5A 290 15.21 1o2dA 371 15.51 e.22.1.2 86591 2dpiA 420 15.56 d.240.1.1,e.8.1.7 131612,131613 1uslA 170 15.93 c.121.1.1 99871 1vhoA 346 16.71 b.49.3.1,c.56.5.4 100694,100695 1yqeA 282 17.05 c.56.7.1 123879 2yutA 207 18.02 1vljA 407 18.03 e.22.1.2 108832 1eg5A 384 19.12 c.67.1.3 34429 3cu2A 237 22.18 1yzfA 195 22.31 c.23.10.5 124275 3c3kA 285 23.56 1atgA 231 23.70 c.94.1.1 35834 1vmeA 410 24.06 c.23.5.1,d.157.1.3 108893,108894 1m33A 258 24.10 c.69.1.26 78514 1m6yA 301 24.46 a.60.13.1,c.66.1.23 78716,78717 1amp 291 24.98 1iowA 306 25.93 c.30.1.2,d.142.1.1 31713,41481 1zwxA 301 26.65 d.151.1.3 125752 1d4oA 184 27.42 c.31.1.4 31748 1gsa 316 27.95 2yvqA 143 28.52 1xklA 273 28.73 c.69.1.20 115410 1amfA 233 28.93 c.94.1.1 35833 1pnoA 180 31.12 c.31.1.4 94953 3brqA 296 31.32 2fssA 365 32.22 1hdoA 206 33.94 c.2.1.2 60965 2yrrA 353 34.26 1ycdA 243 35.07 2eklA 313 36.53 2rgyA 290 36.61 1ra0A 430 36.94 b.92.1.2,c.1.9.5 111756,111757 1uxoA 192 37.22 c.69.1.31 108121 1e4eA 343 37.34 c.30.1.2,d.142.1.1 59221,59222 2hxwA 237 37.51 2odtX 328 37.97 2gmnA 274 38.02 1rtqA 299 38.23 c.56.5.4 97819 1jjtA 228 38.81 d.157.1.1 63139 1ytvA 366 38.89 c.94.1.1 124016 2nvaA 372 39.06 1kjnA 157 40.32 c.115.1.1 72614 3b2yA 275 41.01 1zkpA 268 41.20 d.157.1.9 125205 3cc1A 433 41.29 1lokA 291 42.04 c.56.5.4 78122 1id1A 153 42.93 c.2.1.9 62286 2qdsA 227 44.67 2z67A 456 45.32 2gu2A 312 45.33 2h5yA 254 45.61 1qz9A 416 45.65 c.67.1.3 96621 1r3dA 264 47.37 c.69.1.35 111680 1xgkA 352 48.14 c.2.1.2 115286 2z1mA 345 48.59 3ct9A 356 48.81 1ujnA 348 49.67 e.22.1.1 99460 2e7jA 371 50.58 1yw4A 341 51.89 c.56.5.7 124131 1yasA 257 52.58 c.69.1.20 34801 2fvkA 559 53.23 b.92.1.3,c.1.9.6 134204,134205 1lehA 364 55.84 c.2.1.7,c.58.1.1 30268,33916 2j6iA 364 55.93 1dqzA 280 56.59 c.69.1.3 34638 1rpnA 335 56.65 c.2.1.2 97708 1k20A 310 56.72 c.107.1.1 68027 1ivnA 190 56.85 c.23.10.5 83719 1k6xA 352 57.87 c.2.1.2 68238 2ar9A 278 58.27 1nmsA 249 58.86 c.17.1.1 85879 1qycA 308 59.32 c.2.1.2 96581 1qp8A 303 59.38 c.2.1.4,c.23.12.1 30092,31352 2q0sA 216 59.42 1ako 268 59.59 2oztA 332 59.81 2aebA 322 60.02 c.42.1.1 126617 1tuoA 464 60.41 1anf 370 60.83 1jmkC 230 61.12 c.69.1.22 71747 1iow 306 61.63 1t3iA 420 62.01 c.67.1.3 106354 1ehiA 377 62.50 c.30.1.2,d.142.1.1 31716,41484 1wod 233 63.37 1hkkA 364 64.16 c.1.8.5,d.26.3.1 90634,90635 2q4vA 170 65.10 d.108.1.1 139878 2j44A 217 65.65 1k7kA 221 65.90 c.51.4.1 72104 3bzwA 274 66.60 2pzmA 330 67.32 1omp 370 67.59 1smlA 269 68.41 d.157.1.1 42053 2yvdA 431 69.00 2qj8A 332 69.05 1vhnA 318 69.15 c.1.4.1 100693 2cukA 311 69.19 1z2lA 423 69.71 c.56.5.4,d.58.19.1 124383,124384 1a7tA 232 69.95 d.157.1.1 42041 3bxpA 277 70.20 1atg 231 70.35 2id1A 130 70.57 2bcoA 350 71.24 c.56.5.7 128302 1amf 233 72.10 1bn7A 294 72.46 c.69.1.8 34677 1qj4A 257 73.79 c.69.1.20 34796 2i3dA 249 73.82 1jf9A 408 73.84 c.67.1.3 62931 2gzmA 267 74.52 1auk 489 75.34 1mvlA 209 75.40 c.34.1.1 85146 1e20A 209 76.56 c.34.1.1 31759 2o20A 332 76.57 1b1cA 181 77.55 c.23.5.2 31212 2a8yA 270 78.48 2o5aA 125 78.65 1pswA 348 80.29 c.87.1.7 88287 1zoyA 622 80.51 1dnpA 471 80.84 a.99.1.1,c.28.1.1 18775,31630 2dwuA 276 81.17 1ko3A 230 82.01 d.157.1.1 90974 1aj2A 282 83.11 c.1.21.1 29665 2afwA 329 84.57 c.56.5.8 126707 1sbpA 310 86.99 c.94.1.1 35760 1auoA 218 87.00 c.69.1.14 34716 1u3dA 509 89.27 a.99.1.1,c.28.1.1 107638,107639 2rghA 571 89.32