# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.89e-12 c.56.5.6 90921 1xovA 326 9.23e-11 b.34.11.4,c.56.5.6 122206,122207 2odtX 328 5.305 2d59A 144 5.944 c.2.1.8 131266 2qs9A 194 6.996 2o4cA 380 7.909 1hdoA 206 8.683 c.2.1.2 60965 1uxoA 192 9.830 c.69.1.31 108121 1d4aA 273 10.67 c.23.5.3 31219 1ccwA 137 10.75 c.23.6.1 31238 1iugA 352 11.04 c.67.1.3 90699 1qbgA 272 13.44 c.23.5.3 31227 1sbpA 310 14.13 c.94.1.1 35760 1tca 317 14.34 2c81A 418 14.49 2p6wA 213 15.34 1yqeA 282 17.77 c.56.7.1 123879 1qydA 313 18.36 c.2.1.2 96583 1y80A 210 18.70 2cukA 311 19.66 2i0fA 157 21.31 1p5dX 463 21.46 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1sg0A 230 21.47 c.23.5.3 118955 1vljA 407 22.08 e.22.1.2 108832 2d0oB 125 22.75 c.51.3.2 131078 1qdlB 195 23.37 c.23.16.1 31437 1yw4A 341 25.59 c.56.5.7 124131 1iowA 306 26.01 c.30.1.2,d.142.1.1 31713,41481 1yzfA 195 27.28 c.23.10.5 124275 2f62A 161 28.85 c.23.14.1 133021 2hrcA 359 29.17 c.92.1.1 136687 2i8lA 156 29.18 1lsuA 147 31.25 c.2.1.9 74250 1wyuA 438 31.78 c.67.1.7 121452 1hrkA 359 33.07 c.92.1.1 61228 1wl8A 189 34.26 c.23.16.1 120997 1sbzA 197 36.07 c.34.1.1 112068 1nmsA 249 37.75 c.17.1.1 85879 1rrmA 386 38.14 e.22.1.2 105081 1budA 197 38.77 d.92.1.9 40328 1ta9A 450 39.07 2q7dA 346 39.20 2j07A 420 39.58 a.99.1.1,c.28.1.1 137891,137892 1jq5A 370 39.83 e.22.1.2 67084 1wpnA 188 40.21 c.107.1.1 114826 2ac4A 309 40.33 2ac2A 309 40.79 1a88A 275 41.82 c.69.1.12 34707 1k2yX 463 41.88 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2yxbA 161 42.96 1r55A 214 43.59 d.92.1.9 111694 1zx1A 231 44.03 c.23.5.3 125760 1eexB 224 44.16 c.51.3.1 33213 1w4xA 542 44.87 c.3.1.5,c.3.1.5 109171,109172 1vicA 262 45.93 c.68.1.13 100756 1dbwA 126 46.56 c.23.1.1 31095 2bzsA 236 46.73 c.23.5.3 129560 2qwxA 231 47.32 2f1rA 171 48.07 1twyA 290 49.01 c.94.1.1 112767 1qp8A 303 49.10 c.2.1.4,c.23.12.1 30092,31352 3bijA 285 49.16 2hufA 393 49.21 2yrrA 353 49.66 1gdhA 320 50.45 c.2.1.4,c.23.12.1 30095,31355 2gu2A 312 50.51 1i1qB 192 50.71 c.23.16.1 61544 1x0lA 333 51.30 2ef5A 290 51.46 1dxy 333 51.56 1dxyA 333 51.63 c.2.1.4,c.23.12.1 30094,31354 2gmsA 390 53.09 1i7qB 193 53.24 c.23.16.1 61902 1xs5A 241 54.98 c.94.1.1 115912 1q0rA 298 56.22 c.69.1.28 95508 2a5lA 200 56.51 c.23.5.8 126176 2bkwA 385 56.82 c.67.1.3 128714 1o2dA 371 56.88 e.22.1.2 86591 3b2yA 275 58.82 2pjkA 178 59.20 2hmvA 144 59.89 c.2.1.9 136615 2j4dA 525 60.26 1y5eA 169 60.30 c.57.1.1 122632 1bykA 255 60.44 c.93.1.1 35706 2h88A 621 61.15 1y81A 138 61.93 c.2.1.8 122731 2h78A 302 62.70 2amjA 204 63.75 1xmpA 170 63.92 c.23.8.1 115521 2qvcA 313 64.73 1iow 306 65.05 2ejbA 189 65.46 1np7A 489 65.49 a.99.1.1,c.28.1.1 80677,80678 2h1vA 310 65.90 1nbwB 117 65.98 c.51.3.2 80396 2q4zA 312 66.59 1drwA 273 67.09 c.2.1.3,d.81.1.3 30057,39972 1i6aA 219 67.15 c.94.1.1 61827 1l7dA 384 67.75 c.2.1.4,c.23.12.2 77774,77775 2ar9A 278 68.10 1u3dA 509 68.66 a.99.1.1,c.28.1.1 107638,107639 1kgsA 225 69.08 a.4.6.1,c.23.1.1 68596,68597 2egxA 269 69.09 1gsaA 316 69.26 c.30.1.3,d.142.1.1 31718,41477 2a35A 215 69.71 c.2.1.2 126072 2f7lA 455 69.92 1y8qA 346 70.21 1va4A 279 70.41 c.69.1.12 108458 1mp4A 292 70.91 c.68.1.6 79376 2pbqA 178 71.09 1di0A 158 71.40 c.16.1.1 30957 2q0sA 216 72.56 1mkzA 172 72.90 c.57.1.1 84998 1e4eA 343 73.44 c.30.1.2,d.142.1.1 59221,59222 1qnaA 200 74.11 d.129.1.1,d.129.1.1 41226,41227 1vffA 423 74.69 c.1.8.4 120033 1jr2A 286 75.35 c.113.1.1 67111 1tezA 474 75.75 a.99.1.1,c.28.1.1 112409,112410 1kmkA 406 75.90 c.67.1.3 68696 1xvxA 312 76.39 c.94.1.1 116097 2gcgA 330 77.57 1yroB 286 77.94 c.68.1.2 123932 1h7eA 245 78.08 c.68.1.13 60717 1tcaA 317 78.98 c.69.1.17 34726 1iukA 140 82.27 c.2.1.8 83712 2c5aA 379 82.56 c.2.1.2 129894 1sqsA 242 82.70 c.23.5.5 98968 1cjcA 460 83.25 c.3.1.1,c.4.1.1 30319,30604 1gpmA 525 83.33 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1gsa 316 83.59 2dbqA 334 84.72 3brkX 420 84.89 1mxiA 160 85.46 c.116.1.1 79646 1u9cA 224 86.45 c.23.16.2 113234 2r00A 336 86.74 1vb5A 276 86.78 c.124.1.5 113604 2fp3A 316 86.80 2r48A 106 87.23 2driA 271 89.26 c.93.1.1 35637