# List of top-scoring protein chains for t2k.w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jwqA 179 6.14e-27 c.56.5.6 90921 1xovA 326 4.48e-10 b.34.11.4 122206 c.56.5.6 122207 1i9sA 210 7.22e-01 1i9sA c.45.1.1 62099 2c46A 241 1.12e+00 1wa3A 205 2.11e+00 c.1.10.1 120802 1nt0A 286 2.36e+00 b.23.1.1 86143 b.23.1.1 86144 g.3.11.1 86145 1vlwA 217 2.41e+00 c.1.10.1 108868 1zkkA 167 2.89e+00 2jmpA 107 3.07e+00 2bqzA 161 3.39e+00 1gvfA 286 3.72e+00 c.1.10.2 70599 1iudA 380 5.10e+00 c.94.1.1 35786 1ra0A 430 5.16e+00 b.92.1.2 111756 c.1.9.5 111757 1k6wA 426 5.17e+00 b.92.1.2 68236 c.1.9.5 68237 1r9zA 430 5.40e+00 b.92.1.2 111754 c.1.9.5 111755 1ra5A 430 5.51e+00 b.92.1.2 111759 c.1.9.5 111760 1o97C 264 5.81e+00 c.26.2.3 81232 2ywxA 157 6.06e+00 1mdp1 363 6.20e+00 4mbp 2vccA 891 6.22e+00 3b5nD 64 6.33e+00 3bnwA 181 6.73e+00 1mdqA 371 6.82e+00 c.94.1.1 35783 1nl5A 366 6.88e+00 c.94.1.1 91953 1n3xA 366 6.91e+00 c.94.1.1 91609 1ezoA 370 6.96e+00 4mbp c.94.1.1 59539 1t0kA 381 7.12e+00 c.94.1.1 106214 1ytvA 366 7.12e+00 c.94.1.1 124016 1mpbA 370 7.15e+00 c.94.1.1 35780 1a7lA 389 7.18e+00 4mbp c.94.1.1 35787 1fqbA 370 7.18e+00 4mbp c.94.1.1 59985 1anfA 370 7.19e+00 c.94.1.1 35776 1jvyA 372 7.24e+00 c.94.1.1 63308 1mh3A 421 7.28e+00 a.4.1.1 79112 c.94.1.1 79113 2ok2A 402 7.33e+00 1nmuA 382 7.37e+00 c.94.1.1 80665 3b6eA 216 7.41e+00 1laxA 370 7.71e+00 c.94.1.1 84576 1svxB 395 7.71e+00 c.94.1.1 106059 2nyvA 222 7.75e+00 2ragA 417 7.86e+00 2ic4A 187 7.92e+00 1r6zA 509 7.96e+00 b.34.14.1 97169 c.94.1.1 97170 1rc6A 261 8.05e+00 b.82.1.11 97287 1hsjA 487 8.62e+00 4mbp a.4.5.28 61237 c.94.1.1 61238 2yy6A 213 8.64e+00 3c4mA 539 8.64e+00 2uwnA 187 8.74e+00 2obgA 461 8.89e+00 2vgqA 477 8.92e+00 1y4cA 494 9.15e+00 2ef5A 290 9.81e+00 2eivA 291 9.84e+00 1wfjA 136 1.26e+01 b.7.1.2 114584 2pw0A 397 1.31e+01 2fl7A 232 1.33e+01 2cp8A 54 1.35e+01 a.5.2.1 130695 1qokA 282 1.38e+01 1f3rB b.1.1.1 20493 b.1.1.1 20492 2fvuA 222 1.39e+01 1ziuA 370 1.41e+01 c.94.1.1 125138 2vadA 223 1.48e+01 2pfmA 444 1.53e+01 2j13A 247 1.54e+01 c.6.2.3 137934 2pg6A 476 1.57e+01 1mg1A 450 1.57e+01 4mbp c.94.1.1 35790 h.3.2.1 45753 2gb3A 409 1.61e+01 c.67.1.1 134903 2pg5A 476 1.67e+01 1sx7A 164 1.69e+01 d.2.1.3 112140 2pg7A 476 1.71e+01 2nvuB 805 1.72e+01 c.111.1.2 138661 c.94.1.1 138662 2bkiA 858 1.73e+01 2fdvA 476 1.76e+01 1fnoA 417 1.79e+01 c.56.5.4 75841 d.58.19.1 70145 1oyuA 175 1.81e+01 d.2.1.3 87616 2fblA 153 1.82e+01 d.63.1.2 133249 1lyhA 164 1.82e+01 d.2.1.3 36639 1ypxA 375 1.86e+01 1vixA 420 1.92e+01 c.56.5.4 100777 d.58.19.1 100778 2pxyA 114 1.92e+01 2v49C 229 1.93e+01 2p85A 476 1.98e+01 2z31A 112 1.98e+01 2z35A 112 1.98e+01 2vb6A 788 2.07e+01 3bxjA 483 2.08e+01 1uikA 418 2.09e+01 b.82.1.2 107878 b.82.1.2 107879 2bkhA 814 2.10e+01 1e4xL 214 2.15e+01 32c2A b.1.1.1 59240 b.1.1.2 59241 1ac6A 110 2.15e+01 1tcrA b.1.1.1 20606 2v26A 784 2.20e+01 2crlA 98 2.24e+01 1pk1B 89 2.32e+01 a.60.1.2 118712 1rp9A 405 2.50e+01 b.71.1.1 118785 c.1.8.1 118786 2hw8A 228 2.58e+01 1r0aL 211 2.62e+01 b.1.1.1 104681 b.1.1.2 104682 191lA 164 2.62e+01 d.2.1.3 36826 190lA 164 2.64e+01 d.2.1.3 36892 3c5zA 202 2.76e+01 2it9A 127 2.85e+01 d.18.1.3 137634 2qpsA 405 2.86e+01 3cpiG 451 2.87e+01 2ovkA 839 2.89e+01 2bcgG 453 2.90e+01 c.3.1.3 128282 c.3.1.3 128283 d.16.1.6 128284 1ht6A 405 2.91e+01 b.71.1.1 83629 c.1.8.1 83630 1biaA 321 2.94e+01 a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1f99A 162 2.94e+01 1cpcA a.1.1.3 59722 2gwmA 200 2.98e+01 2gwlA 200 3.02e+01 2ga8A 359 3.04e+01 2bv5A 282 3.04e+01 1bvwA 360 3.12e+01 1bvwA c.6.1.1 30668 2bvwA 362 3.14e+01 1bvwA c.6.1.1 30666 1oc7A 364 3.17e+01 c.6.1.1 86794 1ocjA 362 3.18e+01 c.6.1.1 86801 1gz1A 362 3.18e+01 c.6.1.1 76405 1vsaE 182 3.23e+01 1mjiA 182 3.24e+01 d.77.1.1 79208 2v93A 370 3.26e+01 2oteA 214 3.28e+01 1szbA 170 3.29e+01 b.23.1.1 106145 g.3.11.1 106146 1z24A 189 3.31e+01 b.60.1.1 124369 2e74B 160 3.32e+01 2j01C 229 3.33e+01 e.24.1.1 137861 2ogrA 229 3.35e+01 1hysC 214 3.35e+01 32c2A b.1.1.1 61420 b.1.1.2 61421 2pgfA 371 3.35e+01 1uuqA 440 3.38e+01 c.1.8.3 100015 1uunA 184 3.39e+01 f.6.1.2 100012 108lA 164 3.42e+01 d.2.1.3 36669 2hmiC 214 3.47e+01 8fabA b.1.1.1 20274 b.1.1.2 21274 1xa9A 229 3.48e+01 2h9fA 396 3.66e+01 1pk3A 89 3.85e+01 a.60.1.2 118715 2gfqA 298 3.88e+01 c.56.7.1 135106 2p20A 652 3.91e+01 2p2jA 652 3.92e+01 2p2fA 652 3.94e+01 2p2qA 652 3.95e+01 1mkfA 382 3.98e+01 b.116.1.1 79232