Best Alignments for T0425

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1jwqA	4.0326e-24	1jwqA/T0425-1jwqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.5.6
1xovA	2.4722e-22	1xovA/T0425-1xovA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.11.4 c.56.5.6
1fnoA	1.5647e+01	1fnoA/T0425-1fnoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.19.1 c.56.5.4
3ce9A	1.8744e+01	3ce9A/T0425-3ce9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fb2A	1.9704e+01	2fb2A/T0425-2fb2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bijA	2.3614e+01	3bijA/T0425-3bijA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1icpA	2.6387e+01	1icpA/T0425-1icpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1o2dA	3.0933e+01	1o2dA/T0425-1o2dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.22.1.2
1yqeA	3.6532e+01	1yqeA/T0425-1yqeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.7.1
1yw4A	3.6992e+01	1yw4A/T0425-1yw4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.5.7
1sr4B	3.7314e+01	1sr4B/T0425-1sr4B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.151.1.1
1jq5A	3.7879e+01	1jq5A/T0425-1jq5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.22.1.2
2rbkA	3.8218e+01	2rbkA/T0425-2rbkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a5hA	3.9048e+01	2a5hA/T0425-2a5hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cp8A	4.1457e+01	2cp8A/T0425-2cp8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pgfA	4.2609e+01	2pgfA/T0425-2pgfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vljA	4.3012e+01	1vljA/T0425-1vljA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.22.1.2
1u0tA	4.3640e+01	1u0tA/T0425-1u0tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.52.1.1
3pmgA	4.4026e+01	3pmgA/T0425-3pmgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
1rrmA	4.5111e+01	1rrmA/T0425-1rrmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.22.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001