# List of top-scoring protein chains for T0425.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jwqA	179	8.56e-22	c.56.5.6	90921
1xovA	326	5.07e-08	b.34.11.4,c.56.5.6	122206,122207
1wa3A	205	7.989	c.1.10.1	120802
1vlwA	217	8.853	c.1.10.1	108868
1nt0A	286	12.66	b.23.1.1,b.23.1.1,g.3.11.1	86143,86144,86145
2jmpA	107	13.26		
2ywxA	157	15.09		
3b5nD	64	15.10		
1iudA	380	22.24	c.94.1.1	35786
1mdp1	363	26.21		
1ra0A	430	28.59	b.92.1.2,c.1.9.5	111756,111757
1k6wA	426	28.76	b.92.1.2,c.1.9.5	68236,68237
1r9zA	430	29.40	b.92.1.2,c.1.9.5	111754,111755
1ezoA	370	29.60	c.94.1.1	59539
1mpbA	370	29.64	c.94.1.1	35780
1ra5A	430	29.68	b.92.1.2,c.1.9.5	111759,111760
1mh3A	421	29.82	a.4.1.1,c.94.1.1	79112,79113
1nl5A	366	29.87	c.94.1.1	91953
1mdqA	371	29.90	c.94.1.1	35783
1n3xA	366	29.93	c.94.1.1	91609
1t0kA	381	29.95	c.94.1.1	106214
1a7lA	389	29.97	c.94.1.1	35787
2ok2A	402	30.02		
1fqbA	370	30.13	c.94.1.1	59985
1anfA	370	30.19	c.94.1.1	35776
1ytvA	366	30.19	c.94.1.1	124016
1jvyA	372	30.56	c.94.1.1	63308
1nmuA	382	30.60	c.94.1.1	80665
1r6zA	509	30.99	b.34.14.1,c.94.1.1	97169,97170
1laxA	370	31.00	c.94.1.1	84576
1svxB	395	32.12	c.94.1.1	106059
1sr4B	261	32.96	d.151.1.1	105949
3c4mA	539	33.51		
1hsjA	487	34.16	a.4.5.28,c.94.1.1	61237,61238
2ic4A	187	35.47		
2vgqA	477	35.89		
1y4cA	494	39.25		
2obgA	461	40.23		
2uwnA	187	40.83		
1gvfA	286	47.49	c.1.10.2	70599
1ziuA	370	47.78	c.94.1.1	125138
2f2fB	283	51.45	d.151.1.1	132811
1i9sA	210	52.53	c.45.1.1	62099
1szbA	170	57.64	b.23.1.1,g.3.11.1	106145,106146
1bvp1	349	58.43		
2hw8A	228	63.17		
2cp8A	54	65.92	a.5.2.1	130695
2v49C	229	68.49		
2crlA	98	70.08		
1ypxA	375	70.19		
1rc6A	261	74.17	b.82.1.11	97287
2d6mA	159	74.77		
2d6oX	159	74.99		
2fblA	153	77.75	d.63.1.2	133249
1sx7A	164	79.50	d.2.1.3	112140
2vadA	223	85.74		
2d3jA	157	86.11		
1mg1A	450	87.04	c.94.1.1,h.3.2.1	35790,45753