# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.65e-25 c.56.5.6 90921 1xovA 326 1.85e-23 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 1.474 3ce9A 354 3.610 1edgA 380 3.979 c.1.8.3 28807 3pmgA 561 4.772 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1fnoA 417 5.585 d.58.19.1,c.56.5.4 70145,75841 2a5hA 416 6.863 2a0mA 316 8.092 c.42.1.1 125960 2dy0A 190 9.213 2pgfA 371 9.323 1o2dA 371 9.550 e.22.1.2 86591 1rpxA 230 9.574 c.1.2.2 28536 1yqeA 282 11.21 c.56.7.1 123879 1jq5A 370 12.20 e.22.1.2 67084 1xngA 268 12.74 c.26.2.1 122186 3bijA 285 12.93 1nmsA 249 14.74 c.17.1.1 85879 1kfiA 572 16.09 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1b9dA 163 16.43 c.55.3.2 33649 2rbkA 261 17.06 1wqaA 455 17.26 1oj7A 408 17.36 e.22.1.2 103971 2nxfA 322 18.49 1vljA 407 18.57 e.22.1.2 108832 2fp3A 316 19.93 1rrmA 386 23.44 e.22.1.2 105081 1vhoA 346 23.82 b.49.3.1,c.56.5.4 100694,100695 2dumA 170 25.72 2ywxA 157 26.18 1ho1A 242 26.20 c.1.24.1 61097 2f7lA 455 26.55 1ka9H 200 26.74 c.23.16.1 77308 1yw4A 341 26.76 c.56.5.7 124131 2o3aA 178 27.56 1euaA 213 30.38 c.1.10.1 29155 1vixA 420 31.40 c.56.5.4,d.58.19.1 100777,100778 2aeeA 211 33.69 c.61.1.1 126620 1u0tA 307 33.70 e.52.1.1 107567 1k20A 310 33.93 c.107.1.1 68027 2e18A 257 36.23 2arkA 188 36.88 c.23.5.8 127202 2v9dA 343 37.02 1y0bA 197 37.73 c.61.1.1 122476 2rb7A 364 37.75 1f5sA 211 38.07 c.108.1.4 59656 1o1xA 155 39.88 c.121.1.1 86553 2ywuA 181 40.89 1gsjA 258 42.00 c.73.1.2 70397 1iow 306 42.08 1pnoA 180 43.27 c.31.1.4 94953 1ig3A 263 43.93 b.82.6.1,c.100.1.1 62358,62359 2ywjA 186 44.01 2qt3A 403 44.26 3cu2A 237 45.46 1nf2A 268 46.95 c.108.1.10 91849 1ydnA 295 47.13 2pfsA 150 47.76 2tpsA 227 48.59 c.1.3.1 28591 3cdxA 354 49.43 1rz3A 201 50.42 c.37.1.6 98132 1atiA 505 50.42 c.51.1.1,d.104.1.1 33196,40745 1kbjA 412 50.54 c.1.4.1 72280 1dnpA 471 50.78 a.99.1.1,c.28.1.1 18775,31630 1fs1B 141 51.51 a.157.1.1,d.42.1.1 19252,38664 3bghA 236 51.75 2q3bA 313 51.78 1tq8A 163 56.65 c.26.2.4 107204 1nvmA 345 57.05 a.5.7.1,c.1.10.5 86249,86250 1bn6A 294 57.71 c.69.1.8 34678 1vkfA 188 61.03 c.1.29.1 108656 1aj2 282 63.33 1sr4B 261 63.47 d.151.1.1 105949 2i02A 148 66.41 b.45.1.1 136936 1zsyA 357 67.35 1odzA 386 68.38 c.1.8.3 86889 1wbhA 214 69.37 c.1.10.1 120845 1p3wA 404 70.21 c.67.1.3 87752 2yy8A 201 70.59 2hqsC 118 71.71 d.79.7.1 136666 1qb7A 236 72.07 c.61.1.1 34087 1d4oA 184 72.88 c.31.1.4 31748 2q3vA 130 73.23 d.68.6.2 139811 1itg 166 74.18 2p41A 305 74.47 2aebA 322 74.62 c.42.1.1 126617 1g67A 225 75.23 c.1.3.1 60311 2nx9A 464 75.36 1tezA 474 75.55 a.99.1.1,c.28.1.1 112409,112410 1zjrA 211 76.03 1evlA 401 77.70 c.51.1.1,d.104.1.1 33202,40751 1l6rA 227 77.78 c.108.1.10 77768 1ta9A 450 77.86 1uslA 170 78.14 c.121.1.1 99871 1y76A 62 80.73 a.194.1.1 122683 1jjiA 311 82.64 c.69.1.2 66766 1cg2A 393 88.28 c.56.5.4,d.58.19.1 33844,39360