# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jwqA	179	2.07e-25	c.56.5.6	90921
1xovA	326	2.13e-23	b.34.11.4,c.56.5.6	122206,122207
2fb2A	340	1.077		
3ce9A	354	2.987		
1fnoA	417	4.047	d.58.19.1,c.56.5.4	70145,75841
2pgfA	371	6.970		
1o2dA	371	7.644	e.22.1.2	86591
3bijA	285	8.043		
1vljA	407	8.400	e.22.1.2	108832
1rrmA	386	8.517	e.22.1.2	105081
2a5hA	416	8.836		
3pmgA	561	9.252	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1ka9H	200	10.76	c.23.16.1	77308
1jq5A	370	11.42	e.22.1.2	67084
2qt3A	403	11.67		
1edgA	380	13.30	c.1.8.3	28807
1yw4A	341	14.49	c.56.5.7	124131
2a0mA	316	14.85	c.42.1.1	125960
2ywxA	157	18.92		
1kfiA	572	20.65	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68555,68556,68557,68558
2ywuA	181	20.66		
1nmsA	249	22.01	c.17.1.1	85879
1iow	306	22.09		
2fp3A	316	22.25		
1rpxA	230	24.04	c.1.2.2	28536
1u0tA	307	24.10	e.52.1.1	107567
2fiuA	99	24.18	d.58.4.16	133537
2ywjA	186	25.23		
1l2uA	245	26.68	c.1.2.3	73516
1eyrA	228	26.75	c.68.1.13	34514
2dumA	170	26.79		
2arkA	188	26.89	c.23.5.8	127202
1oj7A	408	27.52	e.22.1.2	103971
2dy0A	190	28.34		
2rbkA	261	28.54		
1ig3A	263	29.11	b.82.6.1,c.100.1.1	62358,62359
1xngA	268	29.17	c.26.2.1	122186
2o3aA	178	29.62		
1o1xA	155	30.01	c.121.1.1	86553
1ta9A	450	30.07		
1vixA	420	30.26	c.56.5.4,d.58.19.1	100777,100778
1yqeA	282	30.56	c.56.7.1	123879
1k20A	310	33.62	c.107.1.1	68027
1wqaA	455	35.36		
1vhoA	346	39.86	b.49.3.1,c.56.5.4	100694,100695
1ydnA	295	44.11		
2p41A	305	45.08		
2nxfA	322	45.66		
2i02A	148	46.33	b.45.1.1	136936
3bghA	236	46.64		
1fs1B	141	47.82	a.157.1.1,d.42.1.1	19252,38664
1kbjA	412	48.48	c.1.4.1	72280
2q3bA	313	49.79		
2tpsA	227	51.08	c.1.3.1	28591
1sr4B	261	51.87	d.151.1.1	105949
1uslA	170	54.04	c.121.1.1	99871
1tq8A	163	55.00	c.26.2.4	107204
1nvmA	345	55.07	a.5.7.1,c.1.10.5	86249,86250
1bn6A	294	55.30	c.69.1.8	34678
1f5sA	211	56.39	c.108.1.4	59656
1euaA	213	57.97	c.1.10.1	29155
1ho1A	242	58.00	c.1.24.1	61097
1gsjA	258	59.41	c.73.1.2	70397
2yyuA	246	60.07		
2oczA	231	62.86		
1dbtA	239	64.80	c.1.2.3	28539
1eg5A	384	65.14	c.67.1.3	34429
2rb7A	364	69.87		
1odzA	386	70.63	c.1.8.3	86889
2jgnA	185	71.36		
1zunA	325	71.73	c.26.2.2	125676
2f62A	161	72.09	c.23.14.1	133021
2e18A	257	73.45		
2f7lA	455	75.54		
1kuuA	202	77.53	d.153.2.1	73019
1p3wA	404	77.54	c.67.1.3	87752
2aebA	322	78.05	c.42.1.1	126617
2gt1A	326	80.25		
2z0hA	197	82.03		
1bvwA	360	82.23	c.6.1.1	30668
1tezA	474	83.29	a.99.1.1,c.28.1.1	112409,112410
2fhqA	141	84.19	b.45.1.1	133497
1qjwA	365	84.20	c.6.1.1	30657
1smlA	269	84.69	d.157.1.1	42053
2gu2A	312	85.77		
1n2eA	300	86.85	c.26.1.4	85268
1o97C	264	86.86	c.26.2.3	81232
1aj2	282	86.90		
1evlA	401	87.37	c.51.1.1,d.104.1.1	33202,40751
1b9dA	163	87.88	c.55.3.2	33649
1ei6A	406	88.20	c.76.1.4	90443
1atiA	505	88.45	c.51.1.1,d.104.1.1	33196,40745
1h7eA	245	88.51	c.68.1.13	60717
1y0bA	197	88.73	c.61.1.1	122476
1usgA	346	88.77	c.93.1.1	99864