# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.68e-22 c.56.5.6 90921 1xovA 326 2.25e-20 b.34.11.4,c.56.5.6 122206,122207 1rpxA 230 2.109 c.1.2.2 28536 1rrmA 386 6.701 e.22.1.2 105081 1u0tA 307 8.539 e.52.1.1 107567 2nxfA 322 9.329 1jq5A 370 10.55 e.22.1.2 67084 3pmgA 561 11.01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1vljA 407 11.68 e.22.1.2 108832 1wqaA 455 12.74 1ho1A 242 13.70 c.1.24.1 61097 1o2dA 371 14.01 e.22.1.2 86591 2fiuA 99 14.39 d.58.4.16 133537 1l6rA 227 14.45 c.108.1.10 77768 1tezA 474 14.59 a.99.1.1,c.28.1.1 112409,112410 2o3aA 178 14.76 2dumA 170 15.06 3ce9A 354 15.36 1iow 306 16.07 1tq8A 163 19.88 c.26.2.4 107204 1euaA 213 21.10 c.1.10.1 29155 1fnoA 417 21.42 d.58.19.1,c.56.5.4 70145,75841 1ka9H 200 21.48 c.23.16.1 77308 1k20A 310 22.36 c.107.1.1 68027 1f5sA 211 22.40 c.108.1.4 59656 2rbkA 261 23.22 2fliA 220 24.90 c.1.2.2 133714 2ywuA 181 25.51 2qt3A 403 26.60 2fs2A 151 27.44 d.38.1.5 134003 1wbhA 214 27.48 c.1.10.1 120845 1sr4B 261 27.53 d.151.1.1 105949 2dy0A 190 28.31 2a0mA 316 29.08 c.42.1.1 125960 3bijA 285 30.25 1kfiA 572 30.33 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1rcuA 195 31.80 c.129.1.1 97295 1nmsA 249 31.94 c.17.1.1 85879 1p5dX 463 32.70 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2fb2A 340 33.34 2pbrA 195 33.36 2oczA 231 33.38 1qb7A 236 35.72 c.61.1.1 34087 1fs1B 141 36.58 a.157.1.1,d.42.1.1 19252,38664 1xngA 268 38.34 c.26.2.1 122186 2arkA 188 39.70 c.23.5.8 127202 1atiA 505 41.33 c.51.1.1,d.104.1.1 33196,40745 1k2yX 463 42.34 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1dnpA 471 43.24 a.99.1.1,c.28.1.1 18775,31630 1vecA 206 44.39 c.37.1.19 100575 1vkfA 188 44.67 c.1.29.1 108656 1odzA 386 44.73 c.1.8.3 86889 1edgA 380 45.60 c.1.8.3 28807 2rb7A 364 46.49 1kjnA 157 46.76 c.115.1.1 72614 1ta9A 450 47.37 1l2uA 245 47.76 c.1.2.3 73516 1yqeA 282 48.11 c.56.7.1 123879 1g67A 225 48.55 c.1.3.1 60311 1ig3A 263 49.43 b.82.6.1,c.100.1.1 62358,62359 1zsyA 357 51.68 1m5wA 243 53.46 c.1.24.1 84836 2q3bA 313 53.68 1v95A 130 54.20 c.51.1.1 108435 1gcoA 261 54.21 c.2.1.2 29884 2fuvA 549 55.20 3borA 237 55.48 3bghA 236 56.86 1evlA 401 58.05 c.51.1.1,d.104.1.1 33202,40751 2z0hA 197 61.51 1nf2A 268 61.74 c.108.1.10 91849 1vixA 420 61.79 c.56.5.4,d.58.19.1 100777,100778 1geeA 261 62.08 c.2.1.2 90509 1ybtA 184 63.77 1l7mA 211 64.62 c.108.1.4 73664 1y13A 181 64.73 d.96.1.2 116319 1yw4A 341 66.41 c.56.5.7 124131 2yyuA 246 69.28 2pgfA 371 69.85 2ywxA 157 71.25 1wekA 217 72.35 c.129.1.1 114553 1nrwA 288 72.96 c.108.1.10 86128 2f7lA 455 73.06 2b8eA 273 74.12 c.108.1.7,d.220.1.1 128068,128069 2jmpA 107 74.59 1bia 321 74.73 1jjiA 311 74.95 c.69.1.2 66766 2fp3A 316 75.78 1dcqA 278 76.31 d.211.1.1,g.45.1.1 19178,45326 2ywjA 186 78.84 2bdqA 224 78.96 1j97A 211 79.31 c.108.1.4 62753 1zjjA 263 79.32 1kbjA 412 80.11 c.1.4.1 72280 2g4rA 160 80.74 1mjhA 162 80.81 c.26.2.4 31639 1tuoA 464 81.31 3cu2A 237 82.49 1oj7A 408 82.65 e.22.1.2 103971 1wr8A 231 82.71 c.108.1.10 114836 1dvpA 220 83.59 a.118.9.2,g.50.1.1 19216,45358 2q4oA 215 85.20 c.129.1.1 139872 1zjrA 211 85.75 1wjgA 137 86.10 c.26.2.4 114696 1i6wA 181 86.51 c.69.1.18 61859 1nksA 194 86.89 c.37.1.1 31886 1xu9A 286 87.13 c.2.1.2 116052 1duvG 333 88.34 c.78.1.1,c.78.1.1 35228,35229 1ei6A 406 89.71 c.76.1.4 90443 2jrnA 163 89.85